Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1644 ATGGAGATATCATTGTTAAAAATGATTGTAAATGGCATATCCTCATTTTTGCATTTATCTTTTTCTGGAAACATGAACTCTGCACCTGTCCCAAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTATTGAAGCCAATCATTGATGCAATTGTTTATTCTGAGTTAGCTTCTGATGAAGTTCTTAATAAGATATTGGAAGAAATTGATCTTGCTGTTAATGAATTAAAGGAGCATGTTGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTTCTGCAGCTGAAGGATTCTCAGCATTGTCTCCCTGATGAATTAAGTTCTGAACATTTGCAGCACTGTTCACAAAAACTTAAGCTTTTGGGACATGAAGAAACCTCACCAGTCATTCAGGAAGCTATTACAGAACATCTGGAAAATGTAGGACCCAGTTCAGAGCTCCTGTCAAAAATTGCTGATAGCTTGGGCCTAAGGTCTAATCAGGAGGTTCTTATTGAGGCAGTGGCCCTTGAAAGGTTGAAGGAGAATGCGGAACAAACTGAAAAGACTGCAGAAGCTGAATTGATTGATCAAATGATTGCTGTTGTAACACATATGCACGAGCGTCTTGTTATGCTTAAACAAGCCCAGAGTATCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGGCAAACATATGAACGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTGCAAAGACACGTCAGACTCTGGTTCATACCAACCTAATACCTAATTATACTGTAAAAGCACTAATTGCAAACTGGTGTGAATCGAACAATGTGCAACTGGTTGATCCCACAAAATCCACAAATTTAAATCAAGCATGTGTCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAATCACCTGTTTTTGTTCATTCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGCAGGTTCTCGTTCTTTTAGTTCACCAGCTAATAACTTAACTTCTGGTGGAACTCAGCGAGAGGGAACATCACCTTTGCATCCCCGTTCAACTTCAGAAGGCTCCTTAAGTGGTATGGTTAATGGGCAATATATGGATCTTGCTAGAATATCTCCTGAAGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGCTAGCCATCCATCAATGTCACCATCTAGAAGGGAATCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGATTCCAGTGCACTTTCAAATGCTAATTTTCCTCAAGAAACAGAAGATGATAACAACAATGCTCCTCAGCTGTCAACAAGTGCAGGGCACAGTAGAGAAGCTTCTGGTGAATTAAATCCAGGGCCAGAAACTGCTGGTACTACTTCTGTGGCATCAGTGCATAGAGAACCTGAGTTCCCACTCCGATTGGAGACAAGGTCTCGAAGTCAAGCCATTTGGAGGCGGCCATCAGAGAGGCATGTTCCTAGGATAGTATCTTCTCCTGTTGTTGAAACAAGAGCTGATCTTTCTGCTATTGAAACCCAGGTTCGGAATTTGGTTGAGGGCTTGAAGAGCTCTGATGTTGATACTCAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCGATTGCAAACTGTGGAGCCATTAATGTATTAGTTGATTTACTTCAATCAACTGATACAACAATCCAAGAAAATGCTGTTACTGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTTAAGACTGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCTATTGGACCACTTGTAGAGTTATTGGGAAGTGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATTGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGATTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTGGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGATGAAGGTGGTATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCTGCTGCTCTTCTACATCTTTGCTTGCATAGTACCAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCGCCATTAGTAGCTTTATCACAGTCAGGCACTCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGGCATGGGAGTGCTGGCAGGGGCTGA 2517 0.4251 MEISLLKMIVNGISSFLHLSFSGNMNSAPVPKYYQKAEEILKLLKPIIDAIVYSELASDEVLNKILEEIDLAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFLQLKDSQHCLPDELSSEHLQHCSQKLKLLGHEETSPVIQEAITEHLENVGPSSELLSKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEAELIDQMIAVVTHMHERLVMLKQAQSISPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCAKTRQTLVHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQACVLHGYMESGTTRESPVFVHSRSNQPSSPESAGSRSFSSPANNLTSGGTQREGTSPLHPRSTSEGSLSGMVNGQYMDLARISPEGLDDRSASSDESSVDSASHPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSNANFPQETEDDNNNAPQLSTSAGHSREASGELNPGPETAGTTSVASVHREPEFPLRLETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQVRNLVEGLKSSDVDTQREATAELRLLAKHNMDNRIAIANCGAINVLVDLLQSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVELLGSGTPRGKKDAATALFNLSIFHENKNWIVQAGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKENAAAALLHLCLHSTKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGSAGRG* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1644 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 718 759 IPR000225 GO:0005515
Gso11g1644 838 SUPERFAMILY ARM repeat 555 827 IPR016024 -
Gso11g1644 838 PANTHER U BOX DOMAIN-CONTAINING 7 834 - -
Gso11g1644 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Gso11g1644 838 Gene3D - 536 666 IPR011989 -
Gso11g1644 838 Coils Coil 179 209 - -
Gso11g1644 838 Pfam Armadillo/beta-catenin-like repeat 668 705 IPR000225 GO:0005515
Gso11g1644 838 Pfam Armadillo/beta-catenin-like repeat 709 745 IPR000225 GO:0005515
Gso11g1644 838 Pfam Armadillo/beta-catenin-like repeat 586 623 IPR000225 GO:0005515
Gso11g1644 838 Pfam Armadillo/beta-catenin-like repeat 625 664 IPR000225 GO:0005515
Gso11g1644 838 SMART arm_5 625 665 IPR000225 GO:0005515
Gso11g1644 838 SMART arm_5 747 787 IPR000225 GO:0005515
Gso11g1644 838 SMART arm_5 666 706 IPR000225 GO:0005515
Gso11g1644 838 SMART arm_5 584 624 IPR000225 GO:0005515
Gso11g1644 838 SMART arm_5 707 746 IPR000225 GO:0005515
Gso11g1644 838 SMART arm_5 538 582 IPR000225 GO:0005515
Gso11g1644 838 MobiDBLite consensus disorder prediction 417 485 - -
Gso11g1644 838 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Gso11g1644 838 Gene3D - 667 832 IPR011989 -
Gso11g1644 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Gso11g1644 838 CDD RING-Ubox_PUB 240 282 IPR045210 -
Gso11g1644 838 Coils Coil 62 82 - -
Gso11g1644 838 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Gso11g1644 838 SUPERFAMILY RING/U-box 227 313 - -
Gso11g1644 838 MobiDBLite consensus disorder prediction 338 392 - -
Gso11g1644 838 MobiDBLite consensus disorder prediction 406 515 - -
Gso11g1644 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 719 IPR000225 GO:0005515
Gso11g1644 838 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 834 - -
Gso11g1644 838 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1644 Gso-Chr11 20399136 20406739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1644 196 838 U-box Gene Family AT2G23140 63.328 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1644 - - gmx:100813786 1575.07