Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso11g1638 | ATGCCGGAGATCGGCCAGGCGGCGGTGGCTGCGGCGGCGGATGACACCGCCCTGTTCGGAAAATACGAGCTGGGCCGCATCCTCGGCTGCGGCGCCTTCGCCAAAGTCCACTACGCGCGCAACGTGCAAACGGGGCAGAGCGTGGCCGTGAAAATCATCAACAAAAAAAAACTCGCCGGAACTGGCCTCGCCGGAAACGTGAAGCGCGAAATCACGATCATGAGCAAGCTCCACCACCCCCACATCGTGCGCCTCCACGAGGTCCTCGCCACCAAGACCAAAATCTTCTTCATCATGGACTTCGTCCGCGGCGGCGAGCTGTTCGGGAAAATCTCAAAAGGCCGATTCGCCGAGGATCTCAGCCGCAAATACTTTCATCAACTGATCTCCGCCGTGGGGTACTGCCACTCGCGCGGCGTATTCCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGAGAACGGCGATTTGAGGGTCTCGGATTTCGGGTTGAGTGCGGTTCGGGATCAGATCCGACCCGATGGCTTGCTCCACACGCTTTGCGGAACCCCTGCTTACGTGGCACCAGAGATTTTAGGCAAAAAAGGTTATGATGGTGCCAAGGTTGATGTGTGGTCATGCGGCGTCGTTTTGTTCGTGCTCGCCGCAGGTTACTTACCATTCAACGACCCGAATTTGATGGTAATGTATAGGAAAATCTACAAAGGCGAGTTCCGGTGTCCGCGGTGGATGTCGCCGGAGCTCCGGCGATTCATATCGAAGTTGCTCGACACGAACCCAGAAACGAGGATCACGGTGGATGGCATGACGCGGGACCCGTGGTTCAAAAAAGGGTATAAAGAATTGAAATTTCACGAAGAGGATTACCATGCATCCGGGTCGGGTTCGTTTTTCGGGCCGAAGGATGAGAGGGTGGTGAATTTGAACGCTTTTGATTTGATATCTTTTTCTTCGGGGTTGGATTTGTCCGGGATGTTTGGGGGGGAGTGGGGGGAGAGGTTGGTGACGCGGGAGCCGCCGGAGAGGGTTTTGGAGGCGGCGGAGGAGGCGGGGGCGGCGGCGGGGATGGCGGTGAGGTGGAAGAAGGAGTGTGGGGTGGAGTTGGAAGGATTTAATGGGAGGTTTGGGATTGGGGTGGAGGTTTACCGGCTCACGGCGGAGCTCGCGGTGGTGGAGGTAAGGAAGAGGGGAGGCGACGCCGCGGTGAGGGGTGTGTGGGAGGAGAGGTTGAAGCCATTGTTGCTTGGTGGTGCAACCACGTCGTATAGTAATAGTAGTGAGGATGAACAACAACATCAAGAAGAAGAACAACAACATCAAGAAGAAAAACAGGAACAAGAACCTGAGTCGAAGGTTGCCTGTGAATGA | 1371 | 0.5631 | MPEIGQAAVAAAADDTALFGKYELGRILGCGAFAKVHYARNVQTGQSVAVKIINKKKLAGTGLAGNVKREITIMSKLHHPHIVRLHEVLATKTKIFFIMDFVRGGELFGKISKGRFAEDLSRKYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGDLRVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILGKKGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYRKIYKGEFRCPRWMSPELRRFISKLLDTNPETRITVDGMTRDPWFKKGYKELKFHEEDYHASGSGSFFGPKDERVVNLNAFDLISFSSGLDLSGMFGGEWGERLVTREPPERVLEAAEEAGAAAGMAVRWKKECGVELEGFNGRFGIGVEVYRLTAELAVVEVRKRGGDAAVRGVWEERLKPLLLGGATTSYSNSSEDEQQHQEEEQQHQEEKQEQEPESKVACE* | 457 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso11g1638 | 456 | MobiDBLite | consensus disorder prediction | 418 | 456 | - | - | |
| Gso11g1638 | 456 | ProSiteProfiles | Protein kinase domain profile. | 22 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Gso11g1638 | 456 | ProSiteProfiles | NAF domain profile. | 304 | 328 | IPR018451 | GO:0007165 | |
| Gso11g1638 | 456 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 285 | IPR011009 | - | |
| Gso11g1638 | 456 | Gene3D | Transferase(Phosphotransferase) domain 1 | 12 | 299 | - | - | |
| Gso11g1638 | 456 | ProSitePatterns | Protein kinases ATP-binding region signature. | 28 | 51 | IPR017441 | GO:0005524 | |
| Gso11g1638 | 456 | MobiDBLite | consensus disorder prediction | 429 | 456 | - | - | |
| Gso11g1638 | 456 | Coils | Coil | 423 | 448 | - | - | |
| Gso11g1638 | 456 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 140 | 152 | IPR008271 | GO:0004672|GO:0006468 | |
| Gso11g1638 | 456 | CDD | CIPK_C | 310 | 415 | - | - | |
| Gso11g1638 | 456 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 1 | 442 | - | - | |
| Gso11g1638 | 456 | SMART | serkin_6 | 22 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Gso11g1638 | 456 | PANTHER | - | 1 | 442 | - | - | |
| Gso11g1638 | 456 | Pfam | NAF domain | 308 | 360 | IPR004041 | GO:0007165 | |
| Gso11g1638 | 456 | Gene3D | Kinase associated domain 1, KA1 | 305 | 417 | - | - | |
| Gso11g1638 | 456 | Pfam | Protein kinase domain | 22 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso11g1638 | Gso-Chr11 | 20324114 | 20326819 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso11g1638 | 1 | 416 | CBL-interacting serine-threonine protein kinases | AT2G30360 | 62.763 | 0.0 | 538 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CAMKL-CHK1 | Gso11g1638 | Pkinase | 4e-68 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso11g1638 | - | K12761 | gsj:114377188 | 870.537 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso11g1638 | 11 | 20324114 | 20326819 | Gso11g1638 | 11 | 20324114 | 20326819 | ECH |