Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1632 ATGGCTAGAAAGAAGTTGAATCTTACATACATACCCAATGACTCAAAGAGGAAGACAACATTGAAGAAAAGAAAGAATGGTTTGATGAAGAAGATGAATGAAATTAGCACTCTTTGTGGGATTGAAACATGTGCTATAATCTATAGTCCAAATGATCCTCAGCCAGAGGTTTGGCCATCTGACTCTGGAGTCCAAAGGGTGCTTTCAAGGTTCATGGAAATGCCTGAAGTGAGACAAAGCAGAAAGATGTTGAATCAGGAGAGCTTTTTGAGGCAAATGATCACCAAAGGCCAACAGCAGTTGACAAGACAAAGGAATGAAAACAGGAAGAAAGAGATGACCAATCTTATGCTTCAATACCTGACCGCTGGAAAGGTTGTTGGCAATCCTAGCTTGGTGGATTTGAATGATCTCTCATGGTTGATTGATCAGAACCTCAATGAAATAGAAAAGAAGATCACCATGCTCCAAATCCAAGAAGTGGTGATACCAGTGATTGAAAATGAAGGACACATGAATCATGTTCAAGGGCTGGAGAGCAACATGGACACCAAGAAAAAGCAACATTGA 570 0.4035 MARKKLNLTYIPNDSKRKTTLKKRKNGLMKKMNEISTLCGIETCAIIYSPNDPQPEVWPSDSGVQRVLSRFMEMPEVRQSRKMLNQESFLRQMITKGQQQLTRQRNENRKKEMTNLMLQYLTAGKVVGNPSLVDLNDLSWLIDQNLNEIEKKITMLQIQEVVIPVIENEGHMNHVQGLESNMDTKKKQH* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1632 189 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
Gso11g1632 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gso11g1632 189 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Gso11g1632 189 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Gso11g1632 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g1632 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g1632 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso11g1632 189 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso11g1632 189 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso11g1632 189 PANTHER MADS BOX PROTEIN 2 162 - -
Gso11g1632 189 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1632 Gso-Chr11 20204864 20206060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1632 1 157 Type I MADS-box Gene Family AT5G48670 54.140 1.04e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1632 SRF-TF 6.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1632 - - gmx:100785964 379.407