Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1626 ATGGCGAGAAAGAAGGTTGACTTTACATACATAAGCAATCCGAGGAAGAGGAAGGCTGCATTGAAGAAAAGGAAAAATGGTTTGCTGAAAAAGATTGATGAAATCACAACCCTTTGTGGCATTCAGGCATGCGCTATAATTTATACTCCAGACGAACCTGAGCCTGAGGTTTGGCCATCCAACCAAGGAGTGGAAAGTGTGATTTTCAACTTTAGGGGAGTTTCTGAATCGGCACGAAACAAAAGAATGTTTTGTCAAGAGTCACTTTTAATGAAAAACATAACCTTAGCACAAGGGCAGCTCAAGAAACTTAGGGATGAAAACAGAAAGAAGGAGATAGGCCTTTTCTTGTGTCAATACTTTGCTGGTGGTAACAACCTTGGCAAGTGCAACATTATTGATCTGAATGATATCACGTTCTTGGCTGATAAAAAATTGGAGGAGATTACAAAGAAAATTGAAATGCTCCTTGTCCAAGAGGTGACACCAGCTACTGAAAATGAGGATAAACCGTGA 516 0.4012 MARKKVDFTYISNPRKRKAALKKRKNGLLKKIDEITTLCGIQACAIIYTPDEPEPEVWPSNQGVESVIFNFRGVSESARNKRMFCQESLLMKNITLAQGQLKKLRDENRKKEIGLFLCQYFAGGNNLGKCNIIDLNDITFLADKKLEEITKKIEMLLVQEVTPATENEDKP* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1626 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g1626 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g1626 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g1626 171 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Gso11g1626 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gso11g1626 171 PANTHER MADS BOX PROTEIN 2 162 - -
Gso11g1626 171 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Gso11g1626 171 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gso11g1626 171 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1626 Gso-Chr11 19988242 19988903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1626 1 156 Type I MADS-box Gene Family AT5G48670 44.231 9.21e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1626 SRF-TF 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1626 - - gmx:100781335 332.413