Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1615 ATGAAAATCCCTTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGAGTTCCGCTTCTGCTCCAATGCGGGCACGGGTTCTGCAGAGAGTGTCTCTCGAGAATGTTCTCGGCGTCTTCGGACGCCACGCTGGCGTGTCCCAGGTGCCGCCACGTGTCCACAGTAGGAAACTCGGTTCAGGCGTTGAGGAAGAACTACGCGGTGCTCGCGCTCCTCAACTCCGCCGCGGCCGCCAACGGCGGTGGCGGAGGGCGGTCGAGTTTCGACTGCGACTGCACCGACGACGAGGACGGTGACGGCGGTGGAGAGGATGAGGAGGAGGACGACGAGAAGCGGCGGCGGAATAGCCGCGAGTCGCAGGCGTCGAGCTCCGGCGGTGGTTGCGCGCCGGTGATCGAGCTCGGCGGCGGCGGCGGCGGCGCGCACAATGACCTGAAGCTGGTGCAGCGGATTGGGGAGGGGAGGAGGGCGGGGGTGGAGATGTGGATGGCAGTGATCAGTGGCGGTGGCGGCGAGGTAGGACGGCAGCGGTGCCGGCACAACGTGGCGGTGAAGAAGGTGGCGGTGGCGGAGGGGATGGATTTGGATTGGGTGCAGGGGAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGCAGGAATGTGTGCACTTTCCATGGCACAATGAGGGTGGAAGACAGTTTGTGTCTTGTGATGGATAAGTGTTATGGATCGGTTCAGTCTGAGATGCAGCGTAATGAGGGGAGGCTCACTTTGGAACAAGTTCTAAGATATGGGGCAGACATTGCACGAGGTGTTGTTGAGCTTCATGCTGCAGGAGTTGTTTGCATGAATTTGAAACCTTCCAATCTTCTTCTTGATGCAAATGGTCACGCTGTGGTTTCTGACTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCGGAGTGTGACTCTGCGAAGATCCATTCCTGTATGGAATGCATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTGAAGAAATCATTGAATTTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCGTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACTGGTGCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATCTATCGAGCTGTCATTAAAGCTAAGAAATTGCCTCCGCAGTATGCTAGTGTGGTTGGTGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGCTGGCAATATTTCTCCGCCATTTGCAGGAAATACCACGCAGCCCTCCTGCTAGCCCTGATAATGGCTTAGATAAGGGCTCTGTGTCAAATGTGATGGAGCCTTCCCCAGTACCTGAATTGGAAGTTCCTCAGGAAAACCCAAATCATCTTCATCGACTTGTGTCTGAAGGAGATACTGCAGGTGTTAGAGATCTTCTTGCAAAGGCTGCATCAGAAAGTGGCAGCAACTACCTATCAATGCTATTGGAAGCCCAAAATGCTGATGGGCAAACGGCTCTTCACTTAGCTTGTAGACGTGGTAGTGCAGAACTTGTTGAGACAATTCTGGAGTGTAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCCAGAATGTGTTCGTAGCCTTATCAAAAGAAATGCTAATGTGCAGTCACGATTGAGAGATGGTTTTGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGCCAACCAGATTGTATGCGAGAATTACTATTAGCTGGAGCTGATCCCAATGCAGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAAAATGGAGGCTGTAGATCAATGGCCATCTTGAATCCAAAGAACCTGACACCGCTGCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAATCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAATGAGGGGAGAGAACTGGTGCAGATATTGCTTGCAGCAGGAGCTGATCCATCTGCTCAAGATTCCCAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACTAATGATGTGGACTTGGTTAAGGTTATTCTAGGTGCCGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTTGCTGCTGGAGCAGATTATAATTTGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGATACAGCAAAAATGATTCGTGAAAATCTTGACTGGCTTATTGTTATGCTAAGGAATCCTAATGCTGACATTGAAGTCAGAAACCACTGTGGGAAGACACTACGTGACATTTTAGAAGCTCTCCCCCGAGAATGGTTATCTGAAGATCTAATGGAAGCACTCATGAATAGGGGAGTTCATTTGTTTCCTACTGTATTTGAAGTGGGAGACTGGGTGAAGTTTAAAAGATCTGTCACAAAACCAAAACATGGATGGCAAGGTGCTAAACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAGAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGGTTCATGTTCTTGCAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTAAAAGAGCCAAGATTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGCGTTGACGATGATGGAATCCTCCGTGTTGGATTTCCTGGAGCATCAAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACACCAGGAAGCATTGGCATCGTATATTGTATCCGACCAGACAGTAGTCTGTTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGGGACCGGGTATGTGTGAAACGATCTGTTGCAGAACCTAGATATGCATGGGGTGGTGAGACACATCATAGTGTCGGAAGAATAAGTGAGATTGAGAATGACGGTCTCTTAATAATAGAGATACCAAATAGACCCATACCATGGCAAGCTGATCCATCAGATATGGAGAAGGTGGAAGATTTCAAGGTGGGAGATTGGGTGAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAGGATATTACAAGGACTAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGCGATATGGGTGTTGCTTTTTGTTTCAGAAGTAAGCCCTTTTCTTGCTCAGTCACTGATGTGGAGAAGGTTCCTCCATTTGAGGTGGGCCAAGAAATTCATCTGATGCCATCTGTTACTCAGCCACGGCTTGGGTGGTCAAATGAATCAGCAGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCACCTGGAGATGCAGAACGGCTTCCAGGATTTGAAGTTGGGGATTGGGTACGGTCAAAACCAAGCCTGGGAACCAGACCAAGCTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGCAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGTTGAACCAAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGGGTTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTCGCATTTTTCGGTCTGCCAGGACTGTGGAGAGGAGATCCTTCAGACCTTGAGATTGAACAAATGTTTGAAGTGGGAGAGTGGGTGAGGTTGAACGACAATGCAAATAATTGGAAATCAATTGGACCAGGTAGTGTTGGTGTCGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCATTTTTGTTGGATTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGATTTGACAAACTCTCTGTTGGACAGAAGGTTAGAGTAAAACAATATGTAAAGCAACCGAGATTTGGATGGTCAGGGCATACCCATGCTAGTATTGGGACGATACAAGCAATTGATGCTGATGGAAAGCTTCGGATATACACACCAGCAGGATCCAAAACATGGATGTTGGACCCATCAGAAGTGAAGGTGGTAGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTTAGGGTTAAAGCATCAATTTCAACCCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCATTGGGGTGGTGCATCGGATGGCAGACGAGGATTTGTGGGTGGCGTTCTGTTTTACGGAGAGGCTATGGCTTTGTAAGGCGTGGGAAATGGAAAGGGTTAGGCCATTTAAAGTTGGGGACAAGGTAAGGATCAGAGATGGACTGGTGACCCCGCGATGGGGATGGGGAATGGAGACACATGCCAGCAAGGGACAGGTTGTAGGTGTAGATGCAAATGGCAAACTAAGAATAAAATTCCGGTGGAGGGAAGGGAGGCCCTGGATAGGAGACCCTGCTGATCTTGCCCTTGATGAGGACTGA 4914 0.4809 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASSDATLACPRCRHVSTVGNSVQALRKNYAVLALLNSAAAANGGGGGRSSFDCDCTDDEDGDGGGEDEEEDDEKRRRNSRESQASSSGGGCAPVIELGGGGGGAHNDLKLVQRIGEGRRAGVEMWMAVISGGGGEVGRQRCRHNVAVKKVAVAEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVIKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDKGSVSNVMEPSPVPELEVPQENPNHLHRLVSEGDTAGVRDLLAKAASESGSNYLSMLLEAQNADGQTALHLACRRGSAELVETILECREANVDVLDKDGDPPLVFALAAGSPECVRSLIKRNANVQSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKYTDCALVILENGGCRSMAILNPKNLTPLHLCVATWNVAVVKRWVEVATSDEIAESIDIPSPIGTALCMAAASKKDHENEGRELVQILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKVILGAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAADTAKMIRENLDWLIVMLRNPNADIEVRNHCGKTLRDILEALPREWLSEDLMEALMNRGVHLFPTVFEVGDWVKFKRSVTKPKHGWQGAKPKSVGFVQSVPDRDNLIVSFCSGEVHVLANEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRTSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHLMPSVTQPRLGWSNESAATVGKIVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRTGLVEPRWGWRGAQPESQGVITSIHADGEVRVAFFGLPGLWRGDPSDLEIEQMFEVGEWVRLNDNANNWKSIGPGSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPSSHLERFDKLSVGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVKVVEEKELCIGDWVRVKASISTPTHHWGEVSHSSIGVVHRMADEDLWVAFCFTERLWLCKAWEMERVRPFKVGDKVRIRDGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFRWREGRPWIGDPADLALDED* 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1615 1637 CDD RING-HC_ScPSH1_like 5 52 - -
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat region circular profile. 739 770 - -
Gso11g1615 1637 SMART ring_2 6 51 IPR001841 -
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat region circular profile. 772 804 - -
Gso11g1615 1637 SUPERFAMILY Ankyrin repeat 520 816 IPR036770 -
Gso11g1615 1637 ProSiteProfiles Protein kinase domain profile. 147 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1615 1637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Gso11g1615 1637 Pfam RING-type zinc-finger 6 49 IPR027370 -
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Gso11g1615 1637 Pfam Ankyrin repeats (many copies) 596 643 IPR002110 GO:0005515
Gso11g1615 1637 Pfam Mind bomb SH3 repeat domain 1513 1632 IPR040847 -
Gso11g1615 1637 Pfam Mind bomb SH3 repeat domain 1060 1124 IPR040847 -
Gso11g1615 1637 Pfam Mind bomb SH3 repeat domain 880 924 IPR040847 -
Gso11g1615 1637 Pfam Mind bomb SH3 repeat domain 931 998 IPR040847 -
Gso11g1615 1637 Pfam Mind bomb SH3 repeat domain 1130 1248 IPR040847 -
Gso11g1615 1637 Pfam Mind bomb SH3 repeat domain 1256 1377 IPR040847 -
Gso11g1615 1637 Pfam Mind bomb SH3 repeat domain 1383 1504 IPR040847 -
Gso11g1615 1637 SUPERFAMILY Protein kinase-like (PK-like) 144 473 IPR011009 -
Gso11g1615 1637 Gene3D - 593 738 IPR036770 -
Gso11g1615 1637 Gene3D - 472 592 IPR036770 -
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat region circular profile. 524 546 - -
Gso11g1615 1637 Gene3D - 739 872 IPR036770 -
Gso11g1615 1637 PRINTS Ankyrin repeat signature 525 540 IPR002110 GO:0005515
Gso11g1615 1637 PRINTS Ankyrin repeat signature 721 735 IPR002110 GO:0005515
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Gso11g1615 1637 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Gso11g1615 1637 Gene3D Transferase(Phosphotransferase) domain 1 237 456 - -
Gso11g1615 1637 Pfam Protein kinase domain 179 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat profile. 524 557 IPR002110 GO:0005515
Gso11g1615 1637 MobiDBLite consensus disorder prediction 449 482 - -
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 772 801 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 661 692 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 805 840 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 699 734 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 593 622 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 524 554 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 739 768 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 626 657 IPR002110 GO:0005515
Gso11g1615 1637 SMART ANK_2a 558 587 IPR002110 GO:0005515
Gso11g1615 1637 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1636 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Gso11g1615 1637 SUPERFAMILY RING/U-box 5 58 - -
Gso11g1615 1637 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Gso11g1615 1637 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1636 - -
Gso11g1615 1637 MobiDBLite consensus disorder prediction 96 131 - -
Gso11g1615 1637 Pfam Ankyrin repeats (3 copies) 504 586 IPR002110 GO:0005515
Gso11g1615 1637 Pfam Ankyrin repeats (3 copies) 708 803 IPR002110 GO:0005515
Gso11g1615 1637 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1615 Gso-Chr11 19458725 19471924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1615 140 472 MAP Kinase Kinase Kinase AT1G53570 23.615 2.78e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gso11g1615 Pkinase 2.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1615 K16279 - gmx:100777576 3294.98