Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1611 ATGCTGCATCGACGACCTCATTCTCATTCGCCTCGAAACCCCCACACCGGCCCCTTCTCCCTGGACACCCGCTCCCTCACCATCCACTATGTCCTTCACCCAAAACCCAAACCCTTATCCCCTTCGCTCTCTCTGACTGGCCGCTTCGCCGCCAAGATCCGCGACCCCTGGAAAAAGACCCGAAAGTGGCTTGGCACCTTCGACACCACCGAGGAAGCCGTTAGGGCCTACGACGTTGTCTCCATAACACTTCGTGGGCCCAAGGCCAAGACCAACTTCTCCTACGTCCTTGCTTCCTTTCTCCACCTCCCTCCCCCGGTGCTCGCTACTCCCGAAGCCCATGCCCTGGCCCAAGCCCAAGTCCAGGAACAACTAGCCAGACAAGTCGAGTTTTGTGGCCCACTGTTTTTCTTTGTAGCTGATGTAGCTTCCACCGCGCCGATGAGGTCGGAGTACAAGGGTTACAAGTTGGAGAATATCACGGGTTTTGTGGTGAGCAAGGAGGAGCGGAAAGAGAAAAAAATTCCTTTGTTGTTATGTCAGAAAATGTATCGTGTGTGGTGCATAGGAAATGGTATAGTAGTTTACATCTAA 594 0.537 MLHRRPHSHSPRNPHTGPFSLDTRSLTIHYVLHPKPKPLSPSLSLTGRFAAKIRDPWKKTRKWLGTFDTTEEAVRAYDVVSITLRGPKAKTNFSYVLASFLHLPPPVLATPEAHALAQAQVQEQLARQVEFCGPLFFFVADVASTAPMRSEYKGYKLENITGFVVSKEERKEKKIPLLLCQKMYRVWCIGNGIVVYI* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1611 197 ProSiteProfiles AP2/ERF domain profile. 22 94 IPR001471 GO:0003700|GO:0006355
Gso11g1611 197 Gene3D AP2/ERF domain 43 95 IPR036955 GO:0003700|GO:0006355
Gso11g1611 197 Pfam AP2 domain 46 86 IPR001471 GO:0003700|GO:0006355
Gso11g1611 197 SUPERFAMILY DNA-binding domain 46 95 IPR016177 GO:0003677
Gso11g1611 197 MobiDBLite consensus disorder prediction 1 21 - -
Gso11g1611 197 CDD AP2 47 93 IPR001471 GO:0003700|GO:0006355
Gso11g1611 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 47 113 - -
Gso11g1611 197 SMART rav1_2 47 100 IPR001471 GO:0003700|GO:0006355
Gso11g1611 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 47 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1611 Gso-Chr11 19364237 19364970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1611 47 93 AP2-EREBP Transcription Factor Family AT1G50640 76.596 2.72e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso11g1611 AP2 4.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1611 K09286 - gmx:100816599 214.157