Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1608 ATGGAGGATAATAATAATAATAACAACAACAAAGCAGAGAAGCAGCAAGATGATAGTAGCCACCACCACCCATCTCTCCTCCTTCCTAACCCTAATCATAGCACCACCATCAACAACAACACCAAGGAGGATCATCATCATAGGTTGAAGAGAGATGAGTGGAGTGAAGGGGCTGTGACAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTGAGAAACAGAGCAAAACTTAAGGGCCATGATTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCCACCACTGCTGATGCCTCCTCTTCTTGGCCTTTGTATTCTCGCCTCGACGTTCTTCTTCGCGGGACCGCACCGATATCTTCTTCACTGTCACCACCACCTATAGCAGCAGCAAGACCAATAATAGCAGCACCATCGTCTCAATCACCACATAACCAGGCTTTGGTGTTGTTGGAGCCACCTCCTTCTGTTGCTCCTCCACCAATTGCAATTGCACAAAACTCATATGGCTCCAATGGTGTTGAAAGACTACTAGCAAAGGAAGATGGGATAGGAGCCAAGTCATCTGAGCATGTATCTAACAAGAATCCAATGGACTCGGATAGTAGCACACCTGCCCTTTACAGTGAAAAGGACAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAACAACAAGAGGAGAAGGAATAATAATAATGAAGACATGGAAATAGTAGAGAGCATAAGGTGGCTTGCTGAAATGGTGGTGAGGTCAGAACAAACAAGAATGGACACAATGAAAGAGATTGAGAGGATGAGAGTTGAAGCTGAGGCAAAGAGAGGAGAAATGGAGCTTAAGAGAACTGAAATCATTGCCAATACACAACTAGAGATTGCTAAGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTAA 1026 0.4415 MEDNNNNNNNKAEKQQDDSSHHHPSLLLPNPNHSTTINNNTKEDHHHRLKRDEWSEGAVTTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSARANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSSWPLYSRLDVLLRGTAPISSSLSPPPIAAARPIIAAPSSQSPHNQALVLLEPPPSVAPPPIAIAQNSYGSNGVERLLAKEDGIGAKSSEHVSNKNPMDSDSSTPALYSEKDKVRCNKRKMKSENNKRRRNNNNEDMEIVESIRWLAEMVVRSEQTRMDTMKEIERMRVEAEAKRGEMELKRTEIIANTQLEIAKIFASVNKGVDSSLRIGRS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1608 341 Pfam Myb/SANT-like DNA-binding domain 51 139 IPR044822 -
Gso11g1608 341 Gene3D - 54 119 - -
Gso11g1608 341 MobiDBLite consensus disorder prediction 217 233 - -
Gso11g1608 341 MobiDBLite consensus disorder prediction 215 263 - -
Gso11g1608 341 MobiDBLite consensus disorder prediction 22 38 - -
Gso11g1608 341 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 35 337 IPR044823 -
Gso11g1608 341 Coils Coil 289 309 - -
Gso11g1608 341 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 35 337 - -
Gso11g1608 341 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1608 Gso-Chr11 19278762 19281405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1608 27 324 Trihelix Transcription Factor Family AT3G14180 25.424 4.61e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso11g1608 Myb_DNA-bind_4 2.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1608 - - gmx:100813972 587.03