Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1604 ATGAAATCATCCAACATGTGCGAGGAATGTGGTGCCAATTTCAAAAAACACACTTATTTGTTGCAGCACGTGCAAAGTCATTCGCTTGAGATAAGGCCGTATGTGTGTTCTGCTGGTAACTGTCAGGCATGTTACCGAAGGAAGGACCACCTGACTTGTCATCTTTTACAGAATCAAGGGAAGGTTTTTAAATGCCCTGTTGAGAGTTGCAACACTGAGTTCTCTTTGCAAAGCAATATGAAAGGACGTGTTGAGGAGACCCATGAGGACAGTTCTACCTCTACCAGTGACAAAAGTTACAAGCAGCATGCATGTCCTGAAACTGGCTGTGGGAAGGTTTTCAGAATTGCATTGCAGCTATGA 363 0.438 MKSSNMCEECGANFKKHTYLLQHVQSHSLEIRPYVCSAGNCQACYRRKDHLTCHLLQNQGKVFKCPVESCNTEFSLQSNMKGRVEETHEDSSTSTSDKSYKQHACPETGCGKVFRIALQL* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1604 120 SUPERFAMILY beta-beta-alpha zinc fingers 6 55 IPR036236 -
Gso11g1604 120 MobiDBLite consensus disorder prediction 81 101 - -
Gso11g1604 120 SMART c2h2final6 63 88 IPR013087 -
Gso11g1604 120 SMART c2h2final6 34 56 IPR013087 -
Gso11g1604 120 SMART c2h2final6 5 27 IPR013087 -
Gso11g1604 120 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Gso11g1604 120 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Gso11g1604 120 Gene3D Classic Zinc Finger 1 88 - -
Gso11g1604 120 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 2 119 - -
Gso11g1604 120 PANTHER ZINC FINGER PROTEIN 2 119 - -
Gso11g1604 120 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1604 Gso-Chr11 19196650 19198713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1604 32 92 C2H2 Transcription Factor Family AT1G72050 47.541 1.55e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1604 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1604 K09191 - gsj:114375085 241.891