Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1601 ATGAGCATGTTAGGCCTGCGAGACCTAGTTCTCATAGCTCCAAGCCCTTCTTCCCTTAACCACCACCAAGGCCAACCCTTTTCAGAAAACCACACTAACACTCACACTCCCAATAACATTCCTTTGCCTTCTTCAGCAGCTTCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCGACACCATGTGTGCCACAGTCTCATCATCATCATCATCATAACAATGAGGTTCAAGAGTTGGGTGGTGGTGCCAATAGTAACACCACCACCAACTATTGGAACCTCAAGATGTGCCAACAAGAAGTGAATAATCCTCCAAAGAAGGGTGTGATCAACGTGGCTGATCATGATGATGAAAAGGGTATAATGGAGAATGAAGAAAACGGGGTTTATGGGCCTAACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCATCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGCAACACTCACGTGAAGAGCACGTGGATCCCATCGGTTCGCCGCCGCGAGCGCGAGATCACGGTGGCTTCCGGCGGTGGTGGTAAGAGGCCAAGAGGTATAGTGGGGTCATCTCAAAAGGCCACTGTCACTTCTCATAGTTCCAACTCTAATGCTACTACACCTAGGAGCTTAGCTACGAGCTCCTTTCACCAAGATGGTAGCCTGAAGCAGTCATTACTGGGTCATGTTCGAGCACCAGCAGTGTTCAAGTGTCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCCACGGTCCACATTAGTGGCCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAAATGCAGTAGTGCCTTGTGTCTCGGAACTGCAGGTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCCTCTGCCATTGCAATTGGGGTTACAAACAACAATGCATACCCTGCTTCTGCGACTTGA 999 0.4845 MSMLGLRDLVLIAPSPSSLNHHQGQPFSENHTNTHTPNNIPLPSSAASLSVGFGIFPLLTATPCVPQSHHHHHHNNEVQELGGGANSNTTTNYWNLKMCQQEVNNPPKKGVINVADHDDEKGIMENEENGVYGPNFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASGGGGKRPRGIVGSSQKATVTSHSSNSNATTPRSLATSSFHQDGSLKQSLLGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKTANAVVPCVSELQVGNNCSGKNRECSSAIAIGVTNNNAYPASAT* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1601 332 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 331 - -
Gso11g1601 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 331 IPR007818 GO:0003700|GO:0006355
Gso11g1601 332 MobiDBLite consensus disorder prediction 16 43 - -
Gso11g1601 332 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 138 180 IPR006510 -
Gso11g1601 332 MobiDBLite consensus disorder prediction 202 227 - -
Gso11g1601 332 MobiDBLite consensus disorder prediction 186 227 - -
Gso11g1601 332 Pfam Domain of unknown function (DUF702) 138 286 - -
Gso11g1601 332 MobiDBLite consensus disorder prediction 66 86 - -
Gso11g1601 332 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 240 285 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1601 Gso-Chr11 19127772 19145356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1601 1 316 C2H2 Transcription Factor Family AT5G12330 37.982 6.88e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso11g1601 DUF702 7e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1601 - - gmx:100805228 667.922