Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1595 ATGTCCAGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTACGGTTCTCACACTCACTCCCCGCGACGACTCAGACACCACCGACATACCCTTCCCCGAGCCATGCGAAATCTTCGGCGAAGGGGGCGAGGTCGGCTTCCGGACCCCGAACGGCGTCGTTCTGGGCCCGGTGCTCGATTCGTTGCAATGCGGCGGTGGCGGCGGTGGCGGCTCCAACAAGATCAAGAGAAGGAACAAGATTGGAATGGTGAACGGGAGCGTGAGCGTGGTTCACCAGCTCCACGCCATGGTCACTCGCAAGTGCGCCAGAATCGACGCTCGCGTGGTGTGCGTTGAAGCGCTTCCTAGGGTTGTGGTGCTGGTTGACGTGTATGTCCCCGTTCAGGTATGGAGTGGCTGGCAGTTTCCGAGATCGGGACCCGTCGCTGGCGCCGTTTTTCGCCATTTGAGCTGTGATTGGAATGAGAGACGTTCAATGCTTTCATATCCAGACTATTGTAGGAAGACTTATGGAGCAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCCGGTGTGAGCAATTCTTCAAGGAAAATACTATTTCAACTTCATGAAATTTTTAAGGCACTACCTGGTGTAGGAAAGCGGCAGACATTTAATAGTTCCAAGATAATACCTATGGATAACATTTGCAGATCAGGCATTTGGGAGTTATCTGATGATATTTTAACTAAGATTTTAGCTTCCCTGGGCCCAATGGACCTCACTAGGGTTTCTGCAACATGTCATCATTTAAGATCCTTGGCTGCTTCGGTAATGCCTTATACCAAGTTAAATCTGTTTCCTCATCAGAGGACAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACATCCGTTATTTGTAGCTCTCTCAACTGAAGATGGCTTTAGTTTCCATGTAAATACTGTAACTGGTGATATTGTTACTGGGGAAGCTCCCACCGTCAAGGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACGCGAGGTACATTGGCAGACCCGCCAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGATATTACGAGGTCAGTGTTAGTGGTAATCACATCACTGGTTGTACTACCTTGGGTAAGAGGGATGTGTGCCAAGATACCAGCAGAACTAATGATAACCATGATTACTCCTCCAAAAGAGCCAGATTGATAGATCCTGATCAGCAAATAACTAAACTTCATGATTCATGTTCCAGGGAAGAAAACAAATCACCTGTTGATGCATGTTTCAAGGAATCTATGCATTCAAATCAGTTCACTGGGAGTTTGAGTCGCATAAAGAAAAATCTACATTTCACATTTGAAGATGAAGCTATGATTTCCAAGGAAAGAGAAATTGGTGAAGGATTAATTAAAGCAAAGCATGCATTAGATGTTACATCTCATGTATCTCAAAACAAGTCGCCTGGGAAGCCTAAAGGTGACTGTTTTGAGTACAATGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGTAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTCTGTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCATAATATCTGTAAGATAACACACTTGCCAGGGTTTCATTTGAAAGGAACTTGTGGAGGTGAGAAACAAAATGTTTCTTTTTTCACTAGCGTGCTTAAGGAGCACTACTCCTTGATAAATTCTCAGACAAAGAAGGCCCTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGCATCAGGGGTCCTATTTTAAACATTTGTACTGCATCTAATAGACATTTCCACAAAATATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGAGAAAGGTGTTTGCAAGTGGTACTACCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGTGAACCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACGCAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGGTTTATGTTTGGACTGATCATCAAAAGCCATCTGTGCATTGTCTTGCATGGGATTATGATGTTGTCATAACTACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGCTTTGATTCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGGTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAATCGATGGATACTAACAGGAACTCCAACGCCTAACACTCCTAACAGCCAACTTCCTCATCTACAACCATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGGAGGTCTCGTCTGTTACATTTACTTCAAAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCACGAAGAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGGAGTTACAATGAATTGGTAATCACTGTACGACGTAATATATTGATGGCTGATTGGAATGATCCTTCACATATTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTTTAAAAAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGACCCTACTTCAGGAGAGTATACCTCCGTAAGATATAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGTCGCCTTCCACTCATTACCCCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACAATACCAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGAGAGGCCCGACCTGAAAATCCTAAACCGAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCCTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAATGAAGAGACATACTTCAATACAGAAAATAGCAATGATGATTTGCATATTGAGAATAGTTTGCATAGAAGTGATGACAAATCATCAATTCAGACATGTTCTATGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGCCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACCGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCTCGTCCTATTTATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGACTTTTTACAGGATGCTGATAACTTTAGAAGATCACCAATTAAGGATGCTACCGAATCTGTTGATGATAGTGGGGGACGAGGATATAGATCATTGCATGATTTTGCTGAGAGTAGTTATCTACTGAAACTTAGATCTGTGTATACTAATTTGGAAAGTCCAAAAGGTGTTTGA 3969 0.4263 MSSDTSFADHKLCGFLCTVLTLTPRDDSDTTDIPFPEPCEIFGEGGEVGFRTPNGVVLGPVLDSLQCGGGGGGGSNKIKRRNKIGMVNGSVSVVHQLHAMVTRKCARIDARVVCVEALPRVVVLVDVYVPVQVWSGWQFPRSGPVAGAVFRHLSCDWNERRSMLSYPDYCRKTYGANESIWNLSDCHVLGCKLHSGVSNSSRKILFQLHEIFKALPGVGKRQTFNSSKIIPMDNICRSGIWELSDDILTKILASLGPMDLTRVSATCHHLRSLAASVMPYTKLNLFPHQRTAVEWMLHRERNAELLPHPLFVALSTEDGFSFHVNTVTGDIVTGEAPTVKDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDGAQVVWCQHNGNQKCGYYEVSVSGNHITGCTTLGKRDVCQDTSRTNDNHDYSSKRARLIDPDQQITKLHDSCSREENKSPVDACFKESMHSNQFTGSLSRIKKNLHFTFEDEAMISKEREIGEGLIKAKHALDVTSHVSQNKSPGKPKGDCFEYNDTWIQCDACHKWRKLVDNSMANSSAAWFCSMNTDPLYQSCSVPEQHFHNICKITHLPGFHLKGTCGGEKQNVSFFTSVLKEHYSLINSQTKKALTWLAKISTDKLAGMETNGIRGPILNICTASNRHFHKIFQAFGLLKRVEKGVCKWYYPQHLNNLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHQKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSALIQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLQKCMISARKIDLQSIPPCTKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSVRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSREARPENPKPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALRGTNEETYFNTENSNDDLHIENSLHRSDDKSSIQTCSMSSTKTNLNPEKVLIFSQFLEHIHAIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSNCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIYVETLAMRGTIEEQMLDFLQDADNFRRSPIKDATESVDDSGGRGYRSLHDFAESSYLLKLRSVYTNLESPKGV* 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1595 1322 PANTHER OS01G0952200 PROTEIN 39 1303 - -
Gso11g1595 1322 Pfam CW-type Zinc Finger 532 575 IPR011124 GO:0008270
Gso11g1595 1322 ProSiteProfiles F-box domain profile. 237 283 IPR001810 GO:0005515
Gso11g1595 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 1300 IPR027417 -
Gso11g1595 1322 SUPERFAMILY F-box domain 234 276 IPR036047 GO:0005515
Gso11g1595 1322 Pfam SNF2-related domain 288 925 IPR000330 GO:0005524|GO:0140658
Gso11g1595 1322 SMART helicmild6 1162 1244 IPR001650 -
Gso11g1595 1322 SMART ultradead3 281 853 IPR014001 -
Gso11g1595 1322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1138 1287 IPR001650 -
Gso11g1595 1322 CDD DEXDc_SHPRH-like 706 883 - -
Gso11g1595 1322 Gene3D - 1051 1303 IPR027417 -
Gso11g1595 1322 ProSiteProfiles Zinc finger CW-type profile. 527 578 IPR011124 GO:0008270
Gso11g1595 1322 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 39 1303 - -
Gso11g1595 1322 Gene3D - 527 580 - -
Gso11g1595 1322 ProSitePatterns Zinc finger RING-type signature. 1020 1029 IPR017907 -
Gso11g1595 1322 SMART fbox_2 243 283 IPR001810 GO:0005515
Gso11g1595 1322 Pfam F-box domain 242 280 IPR001810 GO:0005515
Gso11g1595 1322 Pfam Helicase conserved C-terminal domain 1143 1244 IPR001650 -
Gso11g1595 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 367 IPR027417 -
Gso11g1595 1322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 687 842 IPR014001 -
Gso11g1595 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 882 IPR027417 -
Gso11g1595 1322 CDD SF2_C_SNF 1147 1254 - -
Gso11g1595 1322 Gene3D - 691 886 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1595 Gso-Chr11 18995603 19004367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1595 279 364 RAD5 or RAD16-like Gene Family AT5G22750 34.043 2.28e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g1595 SNF2_N 3.8e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1595 - - gmx:100803102 2692.92