LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g1578	ATGGAAATGGAGCACAGAGTGATTCCGTTTTCCACGAGAGGGTGGAGGAGGACTTATGATGTTTTCCTCAGTTTTAGAGGAGAGGATACCCGTTTTGGTTTCACTGGTCATCTCTACAACACTTTACGTCATAGAGGGATCAACACTTTCATGGATGATGAGGCGCTTGAGAGAGGAGAACAAATATCAGAAGCCATTTTCAAAGCAATTGAAGAGTCTGGGAAAGCCATCGTTGTGTTCTCGAAAAACTATGCATCCTCAACATGGTGCCTTGAAGAACTTGTCAAAATCCTCAGTTGTATGAAAACTAAGGAACTTAAAGTTTATCCACTATTTTACAACGTGGATCCATCTGAGGTACGGTACCAGAGAGCAAGTTATGGTCAGCAATTGGCTAAGCATGAAATCAAAATGAAGTATAGCAAACAGAAGGTGCAAAACTGGAGGCTGGCTCTGCATGAAGCTGCCAATCTTGTAGGGTGGCATTTTAAAGATGGACATGGATATGAATATGAATTTATCACACGGATTGTTGACGTGGTGGGCATATCAAAACCCAATCTTTTGCCTGTTGATGAATATCTAGTTGGAATTGAGTCACGTATACCTAAAATAATATTCCGTTTGCAAATGACTGATCCCACTGTCATAATGGTGGGGATATGTGGAGTTAGTGGAATTGGTAAAACCACTCTTGCTCAAGCTTTGTTTAATCACATCAGCCCACAATTTGAAGGTTCATGCTTTCTCAGTGATGTTAGAGGAAGTTCAGCCAAATATGGGTTAGCATATCTGCAAGAGGGAATTCTTTCTGATATAGCTGGTGAGAATATCAAAGTGGATAATGAACACAAAGGAATTCCAATCCTGATTAGGAAGTTGCACGGCAAAAGGGTTCTTTTGATACTTGATAATGTGGACAAGCTGGAGCAATTGGAGTATTTAGCAGGAGAATGCAATTGGTTTGGTTTGGGCAGTAGAATTATCATAACTAGCAGGTGTAAAGATGTTCTAGCTGCTCATGGAGTTGAAAATATATATGATGTACCTACGTTAGAACATTATGAAGCTATGCAACTTCTAAGTTCCAAGGTAACCACGGGACCTGTACCTGCTTATTATAATGCCATTTGGAAACGTGCAGTTCACTGTTCCCATGGCCTTCCATTGGTTTTGAAGGATATTGGTTCTGATTTGTCAGAAAAAATGAATGTTATTGGTTCTGATTTATCATGGCCTTCAATTGATGAATTGGGGATTGCACTAGAAAGATATGAACGAGTTTGTGATGGAGAAATTCAGAGTATACTTAAAGTGAGTTATGATAGTTTGAATGAATGTGAGAAGAAAATTTTCCTTGACATTGCATGTTTCTTCATTGGAGAGCCAGTATCATATGTTGAGGAAATACTATCAGCTATTGGTTTCAATCCACAACATAGTATCAACAGACTTATCGATAGATCTCTCCTATCTATCGATTCCAGTGGAAGGTTGATGATGCATGACCATATAAAAGACATGGCCATGAAAATAGTGCAACAGGAAGCACCCCTGCATCCAGAAAAACGAAGTAGATTATGGTGCCCTCAAGATGTTCTTCAAGTTTTAAATGAAAATGAGGGATCTGATAAAATTGAAGTTATGATGTTGGTTGACTTACCACGAGGAAATGATGTACTGAAGTTGAGTGACAAAGCCTTCAAAAATATGAAAAGCCTGAGAATGTTAATTATTAAGGATGCCATATATTCTGGAATCCCCCAACATCTCTCAAATAGCTTGAGAGTTCTGATATGGAGTGGATATCCTTCAGGATGCTTACCACCTGATTTTGTCAAAGTGCCTTCTGATTGTCTCATTTTGAACAATTTCAAGAATATGGAGTGTTTGACTAAAATGGATTTCACTGATTGTGAATTTTTGTCAGAAGTACCTGACATTTCTGGAATCCCAGACTTAAGGATATTGTATCTAGATAATTGTATAAATTTGATTAAGATTCACGATTCTGTTGGATTTCTTGGTAATCTTGAAGAGCTAACTACGATAGGATGCACTAGTCTAAAAATAATTCCATCAGCATTCAAGTTGGCATCTCTTAGAGAGCTCTCTTTCTCTGAGTGCTTGAGACTTGTGAGGTTTCCAGAAATATTGTGTGAGATAGAAAATTTGAAGTATCTCAACTTGTGGCAAACTGCCATAGAGGAATTACCATTCTCTATTGGAAATCTTAGAGGGCTTGAATCTTTAAATCTAATGGAATGTGCTAGGCTTGATAAGCTACCCAGTAGCATTTTTGCACTACCAAGACTTCAGGAAATTCAAGCTGACTCGTGTAGAGGGTTTGACATTTCTATTGAATGTGAAGATCATGGACAACCGAGATTATCTGCTTCTCCAAACATTGTTCATCTGTATCTGAGCTCTTGCAACTTAACAACTGAACATCTTGTTATATGTCTCAGTGGTTTTGCCAATGTGGTATATTTGGACATATCTTACAATAGTTTTACGGTCCTTCCAGCATGCATTAAAGAATGTATCAATTTGAAGACTCTTCTGCTAAGCAATTGCAACCAACTTCAAGATATTTTAGTCATTCCCTCTAAATTAGAAGACATAGATGCATTAAACTGCACATCATTGACATCTCAATCATCAAGTGTACTATTGAGCCAGGCATTTCATGGAACTGGGCAGAAAACTGTAATTCTTCCAGGTTTAAGGATTCCAGAATGGTTTGATCATTGCAGCAGTGAAAGATCCATAACCTTTTGGGGCCGTGAGAGATTCCCAAGGATTTGTGTGTGTGTTTCTTTTGGAATGCTCGAAAATTCACTGCACCACCATTTTCAAGTTACATTCTGTATAGTCATCAATGGCCACAAAAGGATATTGTCCAACCGTTGTTACGATTGGTCAGTTCAGACAGATCATGTGTGGCTTTTTGATCTAACTGCCCTTGTTAGTTATGAAGATCTCAGAGGAACATTGGTGAAGAGTGACTGGAATCATGTGGAGATTGAAATGGAATGGAATTGCTGTATACAAGGTGACCATGGGCCAACAAGAATGGCTATTGTGAAATGGTATGGAATTCACGTATACAGGCAGGAAAGTAAAATGGAGGATATTTCTTTCACAAATCCCAAAAATCTACAAGAAAATATTACAAGTAAAAGGGTTGGTACTGAGGTTTTGGATTCATCAGAGAAAAGCCAAAAGAAGTTGAAAGCAATTTCTCAGTGGGATTGA	3258	0.3831	MEMEHRVIPFSTRGWRRTYDVFLSFRGEDTRFGFTGHLYNTLRHRGINTFMDDEALERGEQISEAIFKAIEESGKAIVVFSKNYASSTWCLEELVKILSCMKTKELKVYPLFYNVDPSEVRYQRASYGQQLAKHEIKMKYSKQKVQNWRLALHEAANLVGWHFKDGHGYEYEFITRIVDVVGISKPNLLPVDEYLVGIESRIPKIIFRLQMTDPTVIMVGICGVSGIGKTTLAQALFNHISPQFEGSCFLSDVRGSSAKYGLAYLQEGILSDIAGENIKVDNEHKGIPILIRKLHGKRVLLILDNVDKLEQLEYLAGECNWFGLGSRIIITSRCKDVLAAHGVENIYDVPTLEHYEAMQLLSSKVTTGPVPAYYNAIWKRAVHCSHGLPLVLKDIGSDLSEKMNVIGSDLSWPSIDELGIALERYERVCDGEIQSILKVSYDSLNECEKKIFLDIACFFIGEPVSYVEEILSAIGFNPQHSINRLIDRSLLSIDSSGRLMMHDHIKDMAMKIVQQEAPLHPEKRSRLWCPQDVLQVLNENEGSDKIEVMMLVDLPRGNDVLKLSDKAFKNMKSLRMLIIKDAIYSGIPQHLSNSLRVLIWSGYPSGCLPPDFVKVPSDCLILNNFKNMECLTKMDFTDCEFLSEVPDISGIPDLRILYLDNCINLIKIHDSVGFLGNLEELTTIGCTSLKIIPSAFKLASLRELSFSECLRLVRFPEILCEIENLKYLNLWQTAIEELPFSIGNLRGLESLNLMECARLDKLPSSIFALPRLQEIQADSCRGFDISIECEDHGQPRLSASPNIVHLYLSSCNLTTEHLVICLSGFANVVYLDISYNSFTVLPACIKECINLKTLLLSNCNQLQDILVIPSKLEDIDALNCTSLTSQSSSVLLSQAFHGTGQKTVILPGLRIPEWFDHCSSERSITFWGRERFPRICVCVSFGMLENSLHHHFQVTFCIVINGHKRILSNRCYDWSVQTDHVWLFDLTALVSYEDLRGTLVKSDWNHVEIEMEWNCCIQGDHGPTRMAIVKWYGIHVYRQESKMEDISFTNPKNLQENITSKRVGTEVLDSSEKSQKKLKAISQWD*	1086

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g1578	1085	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	1066	-	-
	Gso11g1578	1085	Gene3D	-	351	445	IPR042197	-
	Gso11g1578	1085	SUPERFAMILY	L domain-like	501	885	-	-
	Gso11g1578	1085	SMART	till_3	18	158	IPR000157	GO:0007165
	Gso11g1578	1085	ProSiteProfiles	TIR domain profile.	17	152	IPR000157	GO:0007165
	Gso11g1578	1085	Gene3D	-	185	345	IPR027417	-
	Gso11g1578	1085	Gene3D	Ribonuclease Inhibitor	545	713	IPR032675	-
	Gso11g1578	1085	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	1066	IPR044974	GO:0006952
	Gso11g1578	1085	PRINTS	Disease resistance protein signature	218	233	-	-
	Gso11g1578	1085	PRINTS	Disease resistance protein signature	293	307	-	-
	Gso11g1578	1085	PRINTS	Disease resistance protein signature	385	399	-	-
	Gso11g1578	1085	PRINTS	Disease resistance protein signature	743	759	-	-
	Gso11g1578	1085	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	161	IPR035897	-
	Gso11g1578	1085	Pfam	TIR domain	19	184	IPR000157	GO:0007165
	Gso11g1578	1085	Gene3D	-	15	184	IPR035897	-
	Gso11g1578	1085	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	455	IPR027417	-
	Gso11g1578	1085	Pfam	NB-ARC domain	200	405	IPR002182	GO:0043531
	Gso11g1578	1085	Gene3D	Ribonuclease Inhibitor	714	937	IPR032675	-
	Gso11g1578	1085	SMART	AAA_5	215	353	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g1578	Gso-Chr11	18661305	18666242	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g1578	9	780	WRKY Transcription Factor Family	AT4G12020	28.925	4.41e-65	239

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g1578	-		-	gmx:100796191	2160.96