Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1571 ATGGAAGTCATGGAAGAGAGAAAATTTTCTAAATTGTTGTCAGAGCTGATAGTTTTGGTTGATGAGGTTTCTTCTATTGCTATGAACTCTGAAATTGAGGTGGATATTTTTGCTGAGTTTGCCATGTTGGTTGAGAAATTGCCACCAATCTTCAATGACTTGAGGGAAAAAAACACTGTTTTGGACAAGCCGCCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGTTGAGGCGTGCTAAAGCTTTGATAAAAAGCTCCAATTTGAGACAACCTATCAAGCAAATTGAGGACATAACGCATGATATCGGTCGATCCTTGGGCCTTCTGCTTGTAGCCAGCCTTGAAGTGTCCACGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAATTGATGAATGTGAGATTTGATGGCAGTTTAAGTCTAGCTTCAAGTCCAAAATCAGAGTTTTCCACCAGTGACATGAAGCTGACCGGAGAAATAGAAGAGGAAATAGTTAATGTCTCTATCGATGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCGGTTGCAATTTTGAGACTAAAGCAGTTCATGAGGAGTGAAAGACTGGATGGTGGCTTGTTTAACGAGGAAGCAACTCTTGCCATTCTTTTCAATCGTCTAGGTTCATGTAAGGCAGACAATAGGTTGGCGATCATTCGATTGCTAAGAAGTATTGCTTTTGGAAATGATGAGAAAAAGGATAAGATGGTAGATATTGAGTATTTATCAGCAGTGGTGAAGTCACTGACAAGAGATTCAGAAGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGACCTCTCTGACATTCAAGCAGTTCGACGGCGAATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTGCTATACTTAATGGGGATGACTCTGATGCCTCTCATGACGCAGCAAAGTTATTGGATATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCTGAGGCTGGCTACTTCAGGCCACTGGTGCAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCTAGGTTGGAGCTCACTGATCACAGCAAACTTTCCCTTGGAGAAGCTGGGGCAATTGAGCCCCTTGTGAATATGTTTTGTACCGGGAAACTCGAGTCCAAGTTATCATCTCTAAATGCGCTACAAAATCTGTCTACCATGAAAGAAAATGTGCAACACTTGATCAGTTCTGGAATTGCAGGATCTCTGCTACAACTTCTTTTCTCAGTAACATCTGTGCTCATGACTTTGCGCGAGCCTGCATCGGCTATTCTTGCAAGAATTGCTCAGTCAGAATCCATCCTTGTTAATGAAGATGTGGCTCAGCAGATGCTTTCACTTTTGAATCTTTCTAGCCCTATAATTCAAGGTCATCTGTTAGAAGCTCTAAATAACATAGCCTCTCATCCTGGTGCATCCAAGGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTGCTCTTGCCCTTTCTGAAGGAAAACACCACCAAAGTCAGGAGTAAGGTCTTGCAATTGCTATACACTCTCTCAAAAGATCTAACAGATGAGTTGACTGAACATCTTGATGAAACTCATCTTTTCAACATTGTCAATATTGTCTCAACATCAACATTAGACAGTGAAAAGGCTGCGGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAATAAAAAAGTGACAGATATACTGAAGAGGGCAAATTTACTGCCCATTTTAATATCCATTATGTATTCTAGCACAGGAAGTAATTCATCCACAACAAATAGTTTCTTAACAGAGAGTATTGCAAGTGTTATTATTCGCTTCACAATTTCCTCTGACAAGAAACTACAACTTTTTTCAGCCGAACAAGGGGTGATTCCTTTGCTAGTAAAACTGCTCTCAAGTGGTTCACCAATCACAAAATCAAGGGCTTCTATCTCTCTGGCTCAACTATCACAGAATTCTCTGTCTCTTAGGAAATCGAGAAAATCAAGGTGGTCATGTGTTCTGCCCTCGGTGAATGCATATTGTGAAATTCATGAGGGATATTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCGGGTGCTGTTTCTCCCCTTATTCAATTATTGGAAGATACTGAGAGAGAAGTAGTTGAAGCTGCTTTGCATGCCCTCTCAACTCTTTTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTCCATTGCCAAGTTGTCGGGTGTGCAGGCTATTATAAAAAGTCTACAAGTTGAGGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAGGTTGCAGAACATAGATTAAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAAAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTAGCTGAGCTGGAGCTCTTGCAATCTCAATCAAGTTACTTCTGA 2496 0.4038 MEVMEERKFSKLLSELIVLVDEVSSIAMNSEIEVDIFAEFAMLVEKLPPIFNDLREKNTVLDKPPIRKSLESLENELRRAKALIKSSNLRQPIKQIEDITHDIGRSLGLLLVASLEVSTDFREKIGTLQRQLMNVRFDGSLSLASSPKSEFSTSDMKLTGEIEEEIVNVSIDDVVLQLKNGNDEEFAVAILRLKQFMRSERLDGGLFNEEATLAILFNRLGSCKADNRLAIIRLLRSIAFGNDEKKDKMVDIEYLSAVVKSLTRDSEERKEAVGLLLDLSDIQAVRRRIGRIQGCIVMLVAILNGDDSDASHDAAKLLDILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLSLGEAGAIEPLVNMFCTGKLESKLSSLNALQNLSTMKENVQHLISSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASKVRSKMKEKGALQLLLPFLKENTTKVRSKVLQLLYTLSKDLTDELTEHLDETHLFNIVNIVSTSTLDSEKAAAVGILSNLPASNKKVTDILKRANLLPILISIMYSSTGSNSSTTNSFLTESIASVIIRFTISSDKKLQLFSAEQGVIPLLVKLLSSGSPITKSRASISLAQLSQNSLSLRKSRKSRWSCVLPSVNAYCEIHEGYCFVNSTFCLVKAGAVSPLIQLLEDTEREVVEAALHALSTLLQDEIWEGGVNSIAKLSGVQAIIKSLQVEDAKVQEKAIWMLERIFKVAEHRLKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1571 831 Pfam Armadillo/beta-catenin-like repeat 705 737 IPR000225 GO:0005515
Gso11g1571 831 SMART arm_5 491 531 IPR000225 GO:0005515
Gso11g1571 831 SMART arm_5 242 281 IPR000225 GO:0005515
Gso11g1571 831 SMART arm_5 627 667 IPR000225 GO:0005515
Gso11g1571 831 SMART arm_5 699 739 IPR000225 GO:0005515
Gso11g1571 831 SMART arm_5 324 364 IPR000225 GO:0005515
Gso11g1571 831 SMART arm_5 365 405 IPR000225 GO:0005515
Gso11g1571 831 SMART arm_5 743 783 IPR000225 GO:0005515
Gso11g1571 831 Gene3D - 686 829 IPR011989 -
Gso11g1571 831 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 1 831 - -
Gso11g1571 831 Coils Coil 70 90 - -
Gso11g1571 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 710 737 IPR000225 GO:0005515
Gso11g1571 831 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 831 - -
Gso11g1571 831 SUPERFAMILY ARM repeat 340 785 IPR016024 -
Gso11g1571 831 Gene3D - 360 679 IPR011989 -
Gso11g1571 831 Gene3D - 205 359 IPR011989 -
Gso11g1571 831 SUPERFAMILY ARM repeat 171 427 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1571 Gso-Chr11 18509445 18513773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1571 228 831 U-box Gene Family AT1G76390 29.892 5.19e-50 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1571 K08332 - gmx:100791453 1493.4