Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1539 ATGATGATTAAACTTCTCCACCACCCTTTAACCACCAACAAGTCTTCCTACAGAAAAATGAGATATCCGTCATTCAGCCTCCTTAGAGAACACAACATTCTGTTCATAAGGGGCTTCATGATCTTGTTCCTCAGCTGCATAACCATTCAGCTTAATTTCTGTATTTCCAGCACCCCTTCTTCTCTCAAAGCACTTCCCTTGGAGGGACACTTCAGTTTTGAAGAAGCTGACCTTAAACATGCAGCCAGTGACTTTGGCAACAGGTACCAATCTCACCCCATGGCAGTGCTGCATCCAAAATCAGTTTCTGACATTGCAAACACCATAAAGCATATCTGGAACTTGGGGCCAAGTTCTCAGCTCAGTGTTGCAGCTAGAGGCCATGGCCACTCACTCCAGGGGCAAGCACAGGCCCATGGAGGAGTTGTTATCAACATGGAATCACTCAGTGTCCCAGAAATGCAGGTGCATACAGGAGAATCATCTCCTTATGTTGATGTCTCAGGAGGGGAATTGTGGATAAACATCTTGCATGAGACACTAAGGTATGGATTTACACCAAGATCATGGACAGATTACTTACATCTCACAGTTGGTGGCACTTTGTCCAATGCTGGTGTAAGTGGCCAAGCATTTAGGCATGGTCCCCAGATAAGTAATGTTCAGAAGCTGGAGATTGTTACAGGAACTGGAGAAGTGGTAAACTGTTCTGAGGAGCAGAATGGTGAACTCTTTCACAGTGTACTTGGAGGGCTAGGTCAGTTTGGCATTATAACAAGAGCAAGAATATTCCTGGAACCAGCACCTGCCATGGTAAAATGGATCAGGGTGTTGTATGCAGATTTCACAGCATTCATTAGAGACCAAGAGAAATTAATATTTGCAGAAAAGGCCTTTGATTATGTTGAAGGATTTGTGATAATAAACAGAACTGGTCTGCTAAATAACTGGAGCTCATCCTTCAACCCACAAGACCCAGTTCAAGCTAGTGAGTTCAAGTCAGATGGAAGAACTCTCTTCTGCCTAGAATTGGCCAAATACTACAATCTTGAAGAAACCCTTCTAGTGAATCAGGAAGTTGAGAAACATTTGTCCCGCTTGAACTATATCCCATCAACACTTTTTCTAACGGAAGTCACATATGTAGACTTTCTAGACAGGGTGCATACCTCAGAGGTCAAGTTGCGTTCAAAAGGCTTGTGGGATGTTCCACACCCATGGCTCAATCTTTTTATACCCAAAACCAAAATACACCATTTCGCAGAGGTTGTCTTCGGGAACATCGTTAAAGAAACAAGCAACGGCCCTGTCCTTATCTACCCAGTAAATAAATCAAAATGGGACAACAGAACTTCTGTTGTTATTCCAGAGGAAGATATTTTCTACTTAGTGGCATTTCTTGCCTCTGCAGTCCCCTCTTCCAATGGTCCTGATGGCCTTGAGCACATTTTGAGTCGGAACAAAAAAATTTTAGAGTATTGTGAAAGAGCCAATCTTGGGGTAAAGCAATATTTGCCCCACTACTCTACACAGGAAGAATGGACGGCGCACTTTGGTTCCCAATGGGAGATTTTCAAGAAAAGAAAATCACTTTATGACCCTTTGGCTATACTTGCCCCTGGCCAAGGAATATTTCAAAAATCAATAACCTTCTCATGA 1659 0.4298 MMIKLLHHPLTTNKSSYRKMRYPSFSLLREHNILFIRGFMILFLSCITIQLNFCISSTPSSLKALPLEGHFSFEEADLKHAASDFGNRYQSHPMAVLHPKSVSDIANTIKHIWNLGPSSQLSVAARGHGHSLQGQAQAHGGVVINMESLSVPEMQVHTGESSPYVDVSGGELWINILHETLRYGFTPRSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVQKLEIVTGTGEVVNCSEEQNGELFHSVLGGLGQFGIITRARIFLEPAPAMVKWIRVLYADFTAFIRDQEKLIFAEKAFDYVEGFVIINRTGLLNNWSSSFNPQDPVQASEFKSDGRTLFCLELAKYYNLEETLLVNQEVEKHLSRLNYIPSTLFLTEVTYVDFLDRVHTSEVKLRSKGLWDVPHPWLNLFIPKTKIHHFAEVVFGNIVKETSNGPVLIYPVNKSKWDNRTSVVIPEEDIFYLVAFLASAVPSSNGPDGLEHILSRNKKILEYCERANLGVKQYLPHYSTQEEWTAHFGSQWEIFKKRKSLYDPLAILAPGQGIFQKSITFS* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1539 552 Gene3D - 146 270 IPR016169 -
Gso11g1539 552 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 22 549 - -
Gso11g1539 552 ProSiteProfiles PCMH-type FAD-binding domain profile. 89 268 IPR016166 GO:0071949
Gso11g1539 552 SUPERFAMILY FAD-linked oxidases, C-terminal domain 269 545 IPR016164 GO:0003824|GO:0050660
Gso11g1539 552 SUPERFAMILY FAD-binding/transporter-associated domain-like 67 267 IPR036318 GO:0050660
Gso11g1539 552 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 269 545 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso11g1539 552 Gene3D - 271 504 IPR016170 -
Gso11g1539 552 Gene3D - 77 545 IPR016167 -
Gso11g1539 552 PANTHER GULONOLACTONE OXIDASE 22 549 - -
Gso11g1539 552 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 93 128 IPR006093 GO:0016491
Gso11g1539 552 Pfam FAD binding domain 93 237 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1539 Gso-Chr11 17916650 17920332 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1539 K00279 - gmx:100797430 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0606 12 5577873 5598319 Gso11g1539 11 17916650 17920332 GST
Gso15g0380 15 3426012 3441150 Gso11g1539 11 17916650 17920332 PCT
Gso11g3422 11 50156780 50171722 Gso11g1539 11 17916650 17920332 PCT
Gso11g1539 11 17916650 17920332 Gso15g0380 15 3426012 3441150 PCT
Gso11g1539 11 17916650 17920332 Gso11g3422 11 50156780 50171722 PCT