Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1527 ATGACTTCCTCCAACTCTCCGAAACCTGAAAAGAAGATAACCAAAAACACAGAAATCTCCAAAACCCAAAAGAAGAAAACCAAAAACGCTGAAACCCCCAAAACCGAAAAGAAGAAAACCAAAAACGCTGAAACCCCCAAAACCGAAAAGAAGAAAACCAAAAACGCTGAAACCCCCAAAACCGAAAAGAAGAAAAACGCTGAAATCCCCAAAATCGAAAAGAAGAAAACCAAAAGCGCTGAAATCCCTCTAACCGATGGCAAAACGAAGAGGGATAGAGAAATCGCCAAAGAGGAGAACAAGAAGAAGACTAAGAAACCCAAGCTCAGCAATGGCACTTCAAAACAGCGAGACGAGGGATCCAAAAAGGGAGTAGCAGAAGGAAAAGGAGAAGAGGGGAAAATGAACGTGTTTCCGATGAATCGCATCAGAACGATGATTAAGGGCGAAGATCCCGATATGCGTGTTTCTCAGGAAGCATTGTTGGCCATCAACAACGCTGTGGAGAAGTTCCTTGAGCAATTCTCGCAGGAAGCTTATGCTTTTTGTGTTCGGGACCGCAAGAAATGCCTCAGCTACGATCACCTAGATTTTGTTCCTGAGAGAGTGAAAGCTGAGGATGCATTAAGAGAGAGAAGTGCAGCAGGAACAGGAGGACACTAA 663 0.4404 MTSSNSPKPEKKITKNTEISKTQKKKTKNAETPKTEKKKTKNAETPKTEKKKTKNAETPKTEKKKNAEIPKIEKKKTKSAEIPLTDGKTKRDREIAKEENKKKTKKPKLSNGTSKQRDEGSKKGVAEGKGEEGKMNVFPMNRIRTMIKGEDPDMRVSQEALLAINNAVEKFLEQFSQEAYAFCVRDRKKCLSYDHLDFVPERVKAEDALRERSAAGTGGH* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1527 220 MobiDBLite consensus disorder prediction 11 130 - -
Gso11g1527 220 Gene3D Histone, subunit A 91 211 IPR009072 GO:0046982
Gso11g1527 220 MobiDBLite consensus disorder prediction 1 137 - -
Gso11g1527 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 138 197 IPR003958 -
Gso11g1527 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 24 217 - -
Gso11g1527 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 217 - -
Gso11g1527 220 SUPERFAMILY Histone-fold 123 198 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1527 Gso-Chr11 17756946 17759377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1527 110 196 CCAAT-HAP5 Transcription Factor Family AT1G07980 36.082 4.61e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1527 - K03506 gmx:100793738 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1527 11 17756946 17759377 Gso11g1527 11 17756946 17759377 ECH
Gso12g0567 12 5098630 5100852 Gso11g1527 11 17756946 17759377 GST