Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1518 ATGACGGAACCTCTCTCAAACACCGAACTCTCTTCTTCTAAAACCCTAGACCCAACCAACCGCCACGATTCCACTTCGGAATCGCATCAAACGGCTCCGGAAGAGGTTGAACTCAATCGAGAAGACGATGTCGTTCCGACCGCGAAACGGAAGAGGAACGACGGCGTCGTCGAAGACCGTTTGCTGCATCCACTGTGGAAGACCAGCCTCTGCTCCTACTTCCGGAGCCACAACGGATCGTGCAGCCACGGCGGTGCGTGTCGCTACGCGCACGGCGAGGAGGAGCTCCGCCTCCGCCCCGACAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCGCTGAAGACCGAGTCGGACGACAAGCGTGCTGTGTCGGAGGAAGTAATGATGACGGAGGCAGTAGTCGACGACGGCGATGCCGACGGCGACGACGGTTGTGGTGCCAATCACGCGCTTAGCAAATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCTGAGAATTTTAGGACTTTTCTCAGCGAACAGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAGTTGAAGAGTTCAACAAAGGAATTAGAAGGAAAATCAATTGGCAACAAAACGGTAAAGGTGGCTGATGTTCTTCCTCGGTCATTTGAAAAGAAAAGTAATGCCAGTGTTGCATCCCATCAAGAATTAGATGAGGGGGTTGATGTTGCTTCAAGTGGGACTTTGGATGGTGAAACAAATAATGATAACTTGGCAAAGACAAGAAATGTGCGTGATGCAGTGACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAAGCGCTCTCATGCTGATTCTCAAAAAACTTACTCGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCGTGCAAACTAGAGGGTATTATTGCATCTCCAATTGTAAATGGATACCGTAACAAGTGTGAATTTTCTGTTGGATATTCTCTGGGAGGCAAAGTGACAGTAGGCTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAACGTTTCAACAATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGGACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGAAGAACAAATGGGAATGCTGTTGATGCTGAGACTTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCAAAAGTAGCTGCTGAATTCAAGAGGCTTGCTCAGGCATTTGTTGTCGGAGCTACTTCGCATTGTTCGACATTACCCCTTACTGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGGCGCCAGCTGATGCACCGCTGCATTTGCTTCCCATTCCTAAAGCAGCTGGTGATTCTGAGGTGGATGAAAATAATAATGCCAAGGATGTACGAATCCATGATTATGTCAACAATCTCCAGTTTTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGGACAATTGGCTTGACGTTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAACATTAAATTTATATGTTCGAAGGCAGAGGACGTAATGGGATCTCTGTTAAGGGAACACCTGAATGTGACTAAGGAACAAGTTGATGATCCTAATATCTCTGGAAAGGGCAATGACAGTCCCGAGGATAGTGCATGCCCAGAACCTGAAAATGGTGAACTAGCATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGGTAGCACTTGTGAACAAGCTGATGGTATCTCTGAACAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGATGATGCAAATATGCCCAAGGAGCAAAGTGATTATCCAAATATCTCTGGAAGTGGGAATGACATTCCTGAGGATAGTACCTTCCCAGTGCCTGAAAATGGTGAAACTACATCTCATTCAGAAAGTAACAATGCAGAAGTTGGAGGTGAGGTTCAGAAGGGTAGCACTTCTAGAAATGGGAAGACTTCACTGCAACAGTTCAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCTGGCCTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCTTAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCACAGGGCCAAATCTATGCCCATCTCAGAGGCATTCCATCCTGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2673 0.4564 MTEPLSNTELSSSKTLDPTNRHDSTSESHQTAPEEVELNREDDVVPTAKRKRNDGVVEDRLLHPLWKTSLCSYFRSHNGSCSHGGACRYAHGEEELRLRPDNTWDPTSERAKKALKTESDDKRAVSEEVMMTEAVVDDGDADGDDGCGANHALSKCLVHLPRKWSSENFRTFLSEQGIAFKHAKKKKGMMIGFVTFEDEEQLKSSTKELEGKSIGNKTVKVADVLPRSFEKKSNASVASHQELDEGVDVASSGTLDGETNNDNLAKTRNVRDAVTPLAHMAYADQLEQKKSALMLILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLGGKVTVGFMLGNFREGVTAVEEAVDCPNVSTIACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNAVDAETFGGIAEVMLIVQVSTASFDDAKVAAEFKRLAQAFVVGATSHCSTLPLTALVVQDHQGISNVAPADAPLHLLPIPKAAGDSEVDENNNAKDVRIHDYVNNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIKFICSKAEDVMGSLLREHLNVTKEQVDDPNISGKGNDSPEDSACPEPENGELASHCPENNNAEVGSEVQKGSTCEQADGISEQAEDVMGSLLRDDANMPKEQSDYPNISGSGNDIPEDSTFPVPENGETTSHSESNNAEVGGEVQKGSTSRNGKTSLQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPLKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1518 890 MobiDBLite consensus disorder prediction 20 51 - -
Gso11g1518 890 Gene3D Vaccinia Virus protein VP39 751 890 IPR029063 -
Gso11g1518 890 MobiDBLite consensus disorder prediction 713 772 - -
Gso11g1518 890 Pfam Methyltransferase domain 571 629 IPR025714 -
Gso11g1518 890 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 93 IPR000571 GO:0046872
Gso11g1518 890 MobiDBLite consensus disorder prediction 638 692 - -
Gso11g1518 890 Gene3D - 344 543 - -
Gso11g1518 890 MobiDBLite consensus disorder prediction 1 51 - -
Gso11g1518 890 MobiDBLite consensus disorder prediction 740 772 - -
Gso11g1518 890 SUPERFAMILY CCCH zinc finger 63 98 IPR036855 GO:0046872
Gso11g1518 890 MobiDBLite consensus disorder prediction 248 267 - -
Gso11g1518 890 Gene3D - 60 98 - -
Gso11g1518 890 Pfam tRNA (Uracil-5-)-methyltransferase 771 825 IPR010280 GO:0006396|GO:0008173
Gso11g1518 890 CDD AdoMet_MTases 573 627 - -
Gso11g1518 890 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 275 890 IPR029063 -
Gso11g1518 890 Gene3D Vaccinia Virus protein VP39 544 644 IPR029063 -
Gso11g1518 890 MobiDBLite consensus disorder prediction 253 267 - -
Gso11g1518 890 Gene3D - 156 225 IPR012677 -
Gso11g1518 890 Coils Coil 283 303 - -
Gso11g1518 890 MobiDBLite consensus disorder prediction 671 692 - -
Gso11g1518 890 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 81 890 - -
Gso11g1518 890 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 273 890 IPR010280 GO:0006396|GO:0008173
Gso11g1518 890 ProSiteProfiles Zinc finger C3H1-type profile. 65 94 IPR000571 GO:0046872
Gso11g1518 890 ProSitePatterns RNA methyltransferase trmA family signature 1. 785 817 IPR030390 -
Gso11g1518 890 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 81 890 IPR045850 -
Gso11g1518 890 MobiDBLite consensus disorder prediction 1 19 - -
Gso11g1518 890 SUPERFAMILY RNA-binding domain, RBD 159 231 IPR035979 GO:0003676
Gso11g1518 890 SMART c3hfinal6 65 93 IPR000571 GO:0046872
Gso11g1518 890 MobiDBLite consensus disorder prediction 719 733 - -
Gso11g1518 890 CDD RRM_SF 156 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1518 Gso-Chr11 17694398 17700002 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g1518 tRNA_U5-meth_tr 9.9e-09 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1518 K15332 - gmx:100816103 1775.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1518 11 17694398 17700002 Gso11g1518 11 17694398 17700002 ECH
Gso12g0561 12 5041135 5046798 Gso11g1518 11 17694398 17700002 GST