Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1517 ATGACTAGTACAGAGGAAAAGCCTGTGACTGTGAGTGAGGAACATGATGCAAGTTCTTGCAGAAGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGCGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTAGAAATACCCTCAAGAACAGAAGAGAGTTCTCAAGAATTTGTTGCAATCAAAATGCCACCGACACCCAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACATATCATTCTCCTGGACCTTCAACATCAAGAGGCAAATCATCCATAAGAAACCTGCTCCCAAAACTGAGTTTCAGGTATCGGACACCGGCAGATATTGAAAAACCAAATACTGCAGCTCCAGAAGTTTCCTCTACAGGCACTGGAGAAAAGCCTTCAATCTCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAGCGTCGTCATTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCAAGGTGGAAGTGTTGGTGGTCCCTTAAATAAAAGAGAAGCACAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAATGACAAAGATAAAAGCCTAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCCACTCCTCAAGTAAAGGAAGGAAATGAATTGTTGGCCACACACACAACAAATGATACTGAAAATGAAGATGCTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTTTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGCGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGCGATGTGTGCAAAGAGGAAGTTCGAAACTTACCTGTCACTCTATTACGGATCCAAAGTATTCGAAATCGGAATAATGGTGGTAATAGGACTCAGCTGGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTATTGGGTCTACTCTCCTCCATGACATCATCAACAATGGTGAAGAGCAGGTTCATCTGGATATATGCATCTGTTCAGTTTGCTCTAGTGGTTCTCTTTGCGCACATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCCACATTTGCTGGCTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTATTTTAGATGGAGGAGAAGAGTGCAGGCTCTATCAGAGCAGCGACATGGCCCGCAACTGATGCCACAAGCAGGACAAAATCCTCGAACATCAAACGTGCAGCGTCCAGGTCCAGGTTCAGGTTCAGGTTTGGCTCCTTCCAACCACAGTCAACCTGTGGTGCAAAATCAACAGAACTCAAATCAGAGCTGA 1572 0.4351 MTSTEEKPVTVSEEHDASSCRRTVSLPVQKVDDPMAITEETTHVPPRKRQNLLLEIPSRTEESSQEFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTYHSPGPSTSRGKSSIRNLLPKLSFRYRTPADIEKPNTAAPEVSSTGTGEKPSISRSLSLTKIFTPRIKRASSLPLDEIRQSNNESSQGGSVGGPLNKREAQRKIARSLSVPANDKDKSLRRMDSFFRVVPSTPQVKEGNELLATHTTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSIRNRNNGGNRTQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEYFRWRRRVQALSEQRHGPQLMPQAGQNPRTSNVQRPGPGSGSGLAPSNHSQPVVQNQQNSNQS* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1517 523 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g1517 523 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 489 - -
Gso11g1517 523 MobiDBLite consensus disorder prediction 473 523 - -
Gso11g1517 523 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Gso11g1517 523 SMART ringv_2 266 315 IPR011016 GO:0008270
Gso11g1517 523 MobiDBLite consensus disorder prediction 479 523 - -
Gso11g1517 523 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Gso11g1517 523 MobiDBLite consensus disorder prediction 199 213 - -
Gso11g1517 523 MobiDBLite consensus disorder prediction 173 213 - -
Gso11g1517 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Gso11g1517 523 MobiDBLite consensus disorder prediction 175 192 - -
Gso11g1517 523 MobiDBLite consensus disorder prediction 82 116 - -
Gso11g1517 523 MobiDBLite consensus disorder prediction 138 157 - -
Gso11g1517 523 CDD RING_CH-C4HC3_MARCH 267 315 - -
Gso11g1517 523 MobiDBLite consensus disorder prediction 56 74 - -
Gso11g1517 523 PANTHER OS02G0165000 PROTEIN 21 489 - -
Gso11g1517 523 MobiDBLite consensus disorder prediction 1 157 - -
Gso11g1517 523 SUPERFAMILY RING/U-box 263 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1517 Gso-Chr11 17682022 17687676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1517 264 370 C3H Transcription Factor Family AT2G37950 34.454 3.80e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1517 - - gmx:100815566 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1517 11 17682022 17687676 Gso11g1517 11 17682022 17687676 ECH
Gso12g0560 12 5022514 5028573 Gso11g1517 11 17682022 17687676 GST
Gso11g3385 11 49735068 49739692 Gso11g1517 11 17682022 17687676 PCT
Gso11g1517 11 17682022 17687676 Gso11g3385 11 49735068 49739692 PCT