Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1511 ATGGCTAAAGATGTTGAGGTTCAAGAGCAAGGAGGAGAGTACTCTGCAAAAGACTACCATGACCCTCCTCCAGCACCCTTGTTCGACCCAGAGGAGCTCACACAGTGGTCCTTTTATAGAGCCCTAATCGCTGAGTTCATAGCAACCCTTCTCTTCCTTTATGTCACCGTGCTCACCATTATTGGCTACAAAAGGCAGACTGATGCCACGCTAGGTGGCACCGAGTGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTAGGACGCAAGGTTTCGTTGATAAGGGCGTTGTTGTACATGGTAGCACAGTGTGCCGGTGCTATCTGTGGCACTGGATTGGCCAAGGGGTTCCAAAAATCATACTACAACAGGTATGGAGGTGGTGCCAACTCTGTTGCTGATGGCTACAACAATGGTACTGCTTTGGGTGCTGAGATTATTGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTCGGAGCAGCTGTAATCTACAACAAGGACAAAATCTGGGATGACCAGTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCCTTCAGAAGCAACGCTTAA 861 0.4959 MAKDVEVQEQGGEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYVTVLTIIGYKRQTDATLGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGTGLAKGFQKSYYNRYGGGANSVADGYNNGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKDKIWDDQWIFWVGPIVGAAVAAFYHQYILRAAAIKALGSFRSNA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1511 286 PANTHER AQUAPORIN PIP2-7 1 286 - -
Gso11g1511 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Gso11g1511 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Gso11g1511 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g1511 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Gso11g1511 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Gso11g1511 286 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1511 Gso-Chr11 17647653 17649907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1511 1 284 Major Intrinsic Protein MIP AT5G60660 81.690 4.71e-174 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1511 K09872 - gmx:100818032 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1511 11 17647653 17649907 Gso11g1511 11 17647653 17649907 ECH
Gso12g0619 12 5782234 5784628 Gso11g1511 11 17647653 17649907 GST
Gso12g1449 12 37328181 37329837 Gso11g1511 11 17647653 17649907 PCT
Gso11g3380 11 49698522 49700184 Gso11g1511 11 17647653 17649907 PCT
Gso11g1511 11 17647653 17649907 Gso12g1449 12 37328181 37329837 PCT
Gso11g1511 11 17647653 17649907 Gso11g3380 11 49698522 49700184 PCT