Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1503 ATGAAGGAAGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCAGGTGGCATGGTTCAGATGCCACAAGTGCACTCAAAAGTCTTCTACTTCCCACAGGGTCACGCCGAACACGCTCACACAACCATTGATCTGAGAGTTCCACCGTTCATCTTATGCAACGTCGAAGCCGTTAAGTTCATGGCGGACCCAGAAACCGACCAAGTGTTCGCCAAGCTGAGTTTGGTTCCTCTAAGAAACTCGGAACTCGGTCCTGACTCGGACTCTGCTGCTGGTGATGACGCGGCGGAACCTTCTTCTTGTGAAAAGCCTGCGTCTTTCGCCAAGACTCTGACTCAGAGCGACGCCAATAATGGTGGGGGGTTTTCGGTTCCGCGGTACTGCGCGGAGACGATTTTCCCGAGGCTCGACTGCACGGCGGAGCCGCCGGTGCAGACGGTTGTGGCGAAGGACGTTCACGGCGAGACGTGGCGGTTCCGGCACATTTACCGGGGGACGCCACGTAGACACTTGCTGACAACAGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTTGCTGGGGATTCCGTTGTGTTCCTAAGGGCAGAGAATGGTGATTTGTGTGTTGGGATTCGAAGGGCAAAAAAGGGAATTGATGAGGGTTCAGGTTTAGCTTCATCTTCTGTGTGGAGTTCAGCTTCAGGGTCTGGAATTGGGCCTTTTTCTTTTTTCTTGAAAGAAGAAAACAAGATGTTAAGGAATGGTTGTGGTGTTGGTGGGAATTTGAGTGGAAGAGTAAAAGTGAGGGCTGAGGATGTTGTTGAAGCTGTGACTCTTGCTGCTAGTAACAAGGCTTTTGAGGTTGTGTATTACCCAAGAGCCAGTACTCCTGAGTTTTGTGTTAAGGCTTCTTCTGTGGGGGCTGCTATGAGGATTCAGTGGTGTTCCGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTACAAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGACCCCATCTGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGCTGGTTGAATTGGTATCAAACATTCCACTCATCAATTTTACACCCTTCTCTCCACCAAGAAAGAAGCTTCGGCCACAACACCCAGACTTCCCCCTTGATGTTCAATTTCCAATACCAATGCTTTCAGGCAACCAGCATGGGCCTAACAGCCCCTTGTGTGGTTTTTCGGATAATGCTCCTGCAGGGATACAGGGAGCCAGGCATGCTCAATTTGGAAAATCTCTATCAGATCTCCACCTTAACAATAATAAACTGCAGTTGGGGATGCTTCCAACTAATATCCATCAACTTGGAGGAGTGTATACTGGGATTTCAAGTGGTAACATGATGACCAAACATGATAAGAGCAAAGAAAGCTTATCGTGCTTTCTGACCATGGGGAAATCTAGTAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCAATTTTTGCTTTTCGGTCAACCAATTCTCACTGAGCAACAAATTTCTAGCTGTTCTAGAGATGTGTTGTCTCGCGGAAAAAGATCGCTAGGTGATGAGAAGGTCAAAGCGAAATGCGTTTTGGATGACTCGCAATCTACTCTCTCACAGCAGTTTTCACCAGGAAAAGCTTCTTCTGCTGAGTTCTTTTGGCAACTTGGCTTGGATACTGGTCATTGCAAAGTTTTCTTGGAATCAGAAGATGTAGGAAGGACCCTAGACCTATCGCAGTTTGGTTCTTATGAAGAGCTCTATAGGAGACTTGGCAACATGTTTGGGATTGAAAGGTCTGAGATTTTGAACCATGTGCTCTATTATGATGCAGCTGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATATCAAAAGGGCCTTTATTACAGGAACTCGTAATGGTGAACATGGACTAGATCCATCAAACAAAACAGGCCCTCTGAGCATATTTGCTTAA 2094 0.4699 MKEGEKVLDPQLWHACAGGMVQMPQVHSKVFYFPQGHAEHAHTTIDLRVPPFILCNVEAVKFMADPETDQVFAKLSLVPLRNSELGPDSDSAAGDDAAEPSSCEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDCTAEPPVQTVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIDEGSGLASSSVWSSASGSGIGPFSFFLKEENKMLRNGCGVGGNLSGRVKVRAEDVVEAVTLAASNKAFEVVYYPRASTPEFCVKASSVGAAMRIQWCSGMRFKMAFETEDATRISWFMGTIASVQVVDPICWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPLINFTPFSPPRKKLRPQHPDFPLDVQFPIPMLSGNQHGPNSPLCGFSDNAPAGIQGARHAQFGKSLSDLHLNNNKLQLGMLPTNIHQLGGVYTGISSGNMMTKHDKSKESLSCFLTMGKSSKSLEKSDDVKKHQFLLFGQPILTEQQISSCSRDVLSRGKRSLGDEKVKAKCVLDDSQSTLSQQFSPGKASSAEFFWQLGLDTGHCKVFLESEDVGRTLDLSQFGSYEELYRRLGNMFGIERSEILNHVLYYDAAGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNIKRAFITGTRNGEHGLDPSNKTGPLSIFA* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1503 697 Gene3D - 310 382 - -
Gso11g1503 697 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Gso11g1503 697 ProSiteProfiles PB1 domain profile. 585 665 IPR000270 GO:0005515
Gso11g1503 697 SUPERFAMILY DNA-binding pseudobarrel domain 102 210 IPR015300 -
Gso11g1503 697 CDD B3_DNA 108 209 IPR003340 GO:0003677
Gso11g1503 697 Gene3D - 584 670 - -
Gso11g1503 697 SMART B3_2 109 211 IPR003340 GO:0003677
Gso11g1503 697 PANTHER AUXIN RESPONSE FACTOR 2 674 - -
Gso11g1503 697 MobiDBLite consensus disorder prediction 86 106 - -
Gso11g1503 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso11g1503 697 Gene3D - 107 211 IPR015300 -
Gso11g1503 697 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g1503 697 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1503 Gso-Chr11 17542309 17545746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1503 1 669 B3 DNA Binding Superfamily AT4G30080 56.977 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g1503 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1503 - - gmx:100810558 1395.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1503 11 17542309 17545746 Gso11g1503 11 17542309 17545746 ECH
Gso12g0626 12 5876871 5880646 Gso11g1503 11 17542309 17545746 GST
Gso12g1466 12 37573872 37577312 Gso11g1503 11 17542309 17545746 PCT
Gso11g3375 11 49624613 49627694 Gso11g1503 11 17542309 17545746 PCT
Gso11g1503 11 17542309 17545746 Gso12g1466 12 37573872 37577312 PCT
Gso11g1503 11 17542309 17545746 Gso11g3375 11 49624613 49627694 PCT