Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1502 ATGAAGGACTGTTGGTTTTTTGACAACAATTTCAATGGTCTGTCGGATGAGAGTCTTGATGATGTGATGGACATGGAGCTTTTGGATTTGCCCCTTGACTTTGAGGATGTGGAAACTGATGCTGTGGAAGAACAAGATTGGGATGCTCAGCTCAAACTCCTTGAAGACCCACCACCACCACTTGGAGTTTTCCCACTACAACAATCCTCTGCATTCTGTGGACAAACTCGGAATGAGAATGCGAAACTCGACAGCAAGAGTTTCTCTGCTTCTCTAGCGAAGACTGTCAGACCTGCATATGGCAAAACTATTCCTGTCCAGAAAGTCTCTTTAAAAGGAAAAGATTTGCTCCAATTCCAAACCAACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTAGTTCTCCCTCGGTTGAGAACTCCAACTTTGAGTTACCTGTCATCCCAACAAAGCGTCCCCGTACCAAACGCCGGCGTCTCTCAAACATCAGCCTGCTTTACTCTATTCCTTTTATCCTTACTTCACCGGCTTTTCAAAAATTTCAGAGGATGGATTTCTCCAAATCAGATATACAAACACAGCCTTCTGGGGAATTATTATGCAAGTTCAAAAAGAAGCAGAGGAAAAAGGATATTCCCCTGCCGGCTAACAAAATTGAGATGAAGAGATCCTCATCACAGGAGTCAGTTGCACCCAGAAAATGCTTGCATTGTGAGGTGACAAAGACGCCGCAATGGAGAGAAGGACCAATGGGTCCTAAGACCCTATGCAATGCCTGTGGGGTTCGATACCGGTCTGGCCGGCTCTTTGCTGAATACCGGCCTGCATCTAGCCCCACTTTTGTAGCATCACTGCACTCAAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCCACCCAGGTGACTGTTAGATAA 918 0.4532 MKDCWFFDNNFNGLSDESLDDVMDMELLDLPLDFEDVETDAVEEQDWDAQLKLLEDPPPPLGVFPLQQSSAFCGQTRNENAKLDSKSFSASLAKTVRPAYGKTIPVQKVSLKGKDLLQFQTNSPVSVFESSSSSPSVENSNFELPVIPTKRPRTKRRRLSNISLLYSIPFILTSPAFQKFQRMDFSKSDIQTQPSGELLCKFKKKQRKKDIPLPANKIEMKRSSSQESVAPRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPASSPTFVASLHSNSHKKVLEIRNRATQVTVR* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1502 305 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 25 299 - -
Gso11g1502 305 Pfam GATA zinc finger 234 267 IPR000679 GO:0006355|GO:0043565
Gso11g1502 305 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355|GO:0043565
Gso11g1502 305 CDD ZnF_GATA 233 280 IPR000679 GO:0006355|GO:0043565
Gso11g1502 305 ProSiteProfiles GATA-type zinc finger domain profile. 228 264 IPR000679 GO:0006355|GO:0043565
Gso11g1502 305 SMART GATA_3 228 278 IPR000679 GO:0006355|GO:0043565
Gso11g1502 305 PANTHER GATA TRANSCRIPTION FACTOR 25 299 - -
Gso11g1502 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 290 - -
Gso11g1502 305 Gene3D - 229 279 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1502 Gso-Chr11 17520332 17525227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1502 8 298 C2C2-Gata Transcription Factor Family AT1G08010 37.540 8.08e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso11g1502 GATA 6.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1502 - - gmx:100781869 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1502 11 17520332 17525227 Gso11g1502 11 17520332 17525227 ECH
Gso12g0627 12 5893999 5900266 Gso11g1502 11 17520332 17525227 GST
Gso12g1467 12 37585895 37590537 Gso11g1502 11 17520332 17525227 PCT
Gso11g3374 11 49612563 49617017 Gso11g1502 11 17520332 17525227 PCT
Gso11g1502 11 17520332 17525227 Gso12g1467 12 37585895 37590537 PCT
Gso11g1502 11 17520332 17525227 Gso11g3374 11 49612563 49617017 PCT