Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1496 ATGAAGCCGCAGCTCAAAATTGCTCTTGCTTTAGTTGTTAGCTTGCTTTGGATTCAGCAATCATTTTGTGATGAAACTTCTGATACATCTAGCTTAAACAAGTGGAGGTGTAGATGTTCTTTCCAAGGGAACCAAAGCTATTCTCTTGCTAATTGTTCAAAATCATGTGATTGCTTCTCAGATTCTGAAGAGAGTGCATCTGTATGGACATGCGTATGTGATTCCAATGGATTTCCCCAAGTGGCAGCAGATGGTCATAGCTCCAATTGCTTTAATGCTTGCAACTGCACTTGGGGAACCTTCAGCAGGCCGGGAGGTTCAAAGAAGCATGTTTCCAGCAAGATTGTTGTAGTTATACTATTAATATGTGTTATATGCACGACCATGGCATTTCTTGTCTCACTTATATGCCATGTCTACCGAAAGGACAGATGTACAATTCACTCACCAATATTCTCAATGGATAAGGAAACAAGTATTGGTAGTACCACCAACTTAATTAGTCATAGATCAGGAACTTCTTCAGTGCCAGAAACAAAATATGCAATGAATTCTCCAATTTATCATATCACAGGTTGTTTTCAGAAAGCCTCTTTCTTTTTTGGGAACCCAAAAGAAACTTATCATGGGAATATTTTTCCATTTTCGTTAGCCGAACTGGAAAATGCAACAGAAAACTTTTCATCTTCCAACCTAATTGGGGTAGGTGGAAGTAGTTATGTATACCTTGGTAGGCTGAAAGATGGTAGCAATGTGGCAGTTAAACGACTAAAAGATCAAGGAGGGTCAGAAGCAGACTCCGCATTTTTCAAGGAGATTGAACTATTAGCTAGACTTCACCATTGTCATTTGGTTCCTTTGCTTGGATACTGCTCGGAGTTAAAAGGAAAACATGTTCAGAGGTTACTAGTATTTGACTACATGGCAAATGGAAATTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAACATGTCGATTGGGCGACTCGTGTTATGATTGCAATAGGAGCTGCAAGGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAACTTATCAGTGGTCGCCATCCCATCCATAAATCTACTGGCAAAGAAGAAAGCCTTGTTATATGGGCTACTCCTCGCTTACAGGATAGTAGGCGAGTAATAAGGGAGTTGGTTGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCAGATAATGGCATACTTAGCGAAGGAGTGTTTGCTGCTGGATCCTGACACTCGACCAACCATGAGCGAGGTCGTTCAGATTCTTTTGAGTATTTCCCCGGGAAAATCTAGGAGGAGAAGAAACATTCCAGCCAGCCTCTTTCAGGAACCAGAGGATGCAGAAAAGCAAAGGCAATCTACACCCAGTAAATTTCCAACACATAGTTCATTGCCAATATATAATGATCACAATCTTTCTGTTGAGAACAAAAACAAAGCAGAAGATGCAGTTTCAGCTGAGAATATGGAGAGTTTGATCCTCTTGACTTCGAAATCTGACGGTTCTCGTGCATCAGAAGAGGAAATAGTAGACCTGACTGAGCCTAGGTTTGAATCATTTTGCATCACAAATGGCAATGCCCCATGA 1839 0.4111 MKPQLKIALALVVSLLWIQQSFCDETSDTSSLNKWRCRCSFQGNQSYSLANCSKSCDCFSDSEESASVWTCVCDSNGFPQVAADGHSSNCFNACNCTWGTFSRPGGSKKHVSSKIVVVILLICVICTTMAFLVSLICHVYRKDRCTIHSPIFSMDKETSIGSTTNLISHRSGTSSVPETKYAMNSPIYHITGCFQKASFFFGNPKETYHGNIFPFSLAELENATENFSSSNLIGVGGSSYVYLGRLKDGSNVAVKRLKDQGGSEADSAFFKEIELLARLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHVDWATRVMIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRHPIHKSTGKEESLVIWATPRLQDSRRVIRELVDPQLKGNFPEEEVQIMAYLAKECLLLDPDTRPTMSEVVQILLSISPGKSRRRRNIPASLFQEPEDAEKQRQSTPSKFPTHSSLPIYNDHNLSVENKNKAEDAVSAENMESLILLTSKSDGSRASEEEIVDLTEPRFESFCITNGNAP* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1496 612 MobiDBLite consensus disorder prediction 526 552 - -
Gso11g1496 612 Gene3D Transferase(Phosphotransferase) domain 1 308 524 - -
Gso11g1496 612 SUPERFAMILY Protein kinase-like (PK-like) 207 506 IPR011009 -
Gso11g1496 612 Pfam Protein kinase domain 229 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1496 612 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Gso11g1496 612 MobiDBLite consensus disorder prediction 537 552 - -
Gso11g1496 612 Gene3D Phosphorylase Kinase; domain 1 202 307 - -
Gso11g1496 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Gso11g1496 612 PANTHER OS01G0253100 PROTEIN 2 606 IPR045271 GO:0004714|GO:0006468
Gso11g1496 612 CDD STKc_IRAK 233 509 - -
Gso11g1496 612 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 606 - -
Gso11g1496 612 SMART serkin_6 227 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1496 612 ProSiteProfiles Protein kinase domain profile. 227 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1496 Gso-Chr11 17444965 17453346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1496 1 608 Receptor kinase-like Gene Family AT2G28250 51.954 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Gso11g1496 Pkinase 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1496 - - gmx:100305419 1215.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1496 11 17444965 17453346 Gso11g1496 11 17444965 17453346 ECH
Gso12g0633 12 5977808 5984357 Gso11g1496 11 17444965 17453346 GST
Gso12g1474 12 37727103 37733095 Gso11g1496 11 17444965 17453346 PCT
Gso11g1496 11 17444965 17453346 Gso12g1474 12 37727103 37733095 PCT