Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1487 ATGAGCAGCTTAAGGCCCGAATTGCATGTTGCGCAGCAACTTCGGCGCGACAAATTGAGGATCCAAAACAGTTCCCAACAACAACACTTGCAAGAGTTCCCCAACAACCTAGAACAGTTGTCGTTACAACCAGGGTTCAACTTGGATCTTCTTCAAGTAAGAAGCGTTCGAAATGGCAACATGCTTGATGAAGCACTTTATTCATCGGAAATGATCACTTTTCCAAACCCTTTATCTGCTCCTAGAAACCCTTTGGAGTGTCAAGAGCTTATGATGGTTCAGTATGGTTCAACTTCGTTCCCTCATTCATCATCCCCAAAGGAGCAACAATGTGAACCACGCAACTTGGGTGCTAGTTGGATGTTGAATTATAACAACAGCAGCAGCAGCAACAACAACAACAGCAACAACTCCCTTTACTCTTCTGAGCTCAATAACAATGTTTCGAGTGAAATGGCCAATAGAGAAATTCAGAAGCAGTTTGGTGAAATGCAATACCCTCCTTCTTCATCTTCTTCGTCTCCAATTTACCATAATGCCTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAATAATCATCATGGTGAATCTGTGCTTCATTATGGAAACAACGAGTTACGCATTGGGGGTGCTAATTTATGGACACATAATAATAATAATATTCCATTGGGTTTCAAGAAGATTAATAACGATGAACAGTTACATGACAGGAATCATACTCATCAGGGTCTATCATTGTCGCTCTCATCAAATTCAAAACAACAACAATCCAAGCCTTGTTTTGATGAAGGGTCTGTTGTGAAATCACCCTCCTCGACCATGAAGCTGAATGCGCTTTCAAACAACAACAACAACACTGTTTATCGAAATGTTGGCCCTCTCGGTCCTTTCACTGGTTACGCCACGATTTTGAAGAGTTCAAGGTTCTTGAGGCCGTGCCAACAGCTGTTAGATGAATGGTGCTGTCAATCTGGTTCAAAATTTGCAAAGAGAGGGATTTGTGATGTTCCAGAGTGGGTCTCTCGAGATGTCAGTTCTGCTTCTACTTGTGCTACTGCTCTTAATGTTGATGAAAGTGCTGCAAAAGGTGGTGGCAATTCGGGTGCTTCATCCTCTGTGTTGTATTGTTCAATCGAAAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGCGCTGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGACCAGAGTGCCAAAAGAACAAGGCAAAACTATTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAGATGGTTGTTCAATCATTCGAGTCGGTGGCAGGTCTTAGTTTGGCTACCCCGTACGTCTCCTTGGCTCTCAAGTCAGTGTCAAAACACTTCAGGTGCCTAAAAAATGCAATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTTTCAATACCAACCACAAGTACTGGTAGTAAATTTGACAACAACATGGCCAGGCTAAGGTGCATGGACCAAAGTTTTCAAAAAAACAAATCTGGAGGAGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGGGGCTTACCAGAACGCTCAGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACGGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGCGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAAGGCGTGACAACAGAAGCCCGCCAACACCACCAAACCTCTAGTAAAAATGACCAGTTAGCTTCTGCTTCTGAAGGCAGCAACAACCAGCCCAAATCTGATAACCAACCTGCTCACAGGTTCGGTGGCGCCCATGCATCACATTCACATGCAATCCCTGAAAAGCAATTCCAGTGTTTGGAAATGGGGTCATCCTCTTCTGCATGCAACGAGGAACAAATTGGAATGGAAGAAGACCAATGGAATCAAGAGAAGAGGTCAAAACTGGACTGCCAGATTACTACTACAACACCAAGCATGGATGGGACTGTGATGGGGTTTATGCCGTACCGAAGAAGTGGACTTGAGGGTCTTGGATCAGTGTCACTCACTTTGGGTCTTAGGCATGGTGTTGAAGGTGTGCAACAACAACAATTGCAACAAGAGGAGGAGCTTAGGCGTCAATTTGGAGGGCATATGATCTATGACTTTGTGGGCTAG 2304 0.4358 MSSLRPELHVAQQLRRDKLRIQNSSQQQHLQEFPNNLEQLSLQPGFNLDLLQVRSVRNGNMLDEALYSSEMITFPNPLSAPRNPLECQELMMVQYGSTSFPHSSSPKEQQCEPRNLGASWMLNYNNSSSSNNNNSNNSLYSSELNNNVSSEMANREIQKQFGEMQYPPSSSSSSPIYHNALQDMAYGVWGGNNHHGESVLHYGNNELRIGGANLWTHNNNNIPLGFKKINNDEQLHDRNHTHQGLSLSLSSNSKQQQSKPCFDEGSVVKSPSSTMKLNALSNNNNNTVYRNVGPLGPFTGYATILKSSRFLRPCQQLLDEWCCQSGSKFAKRGICDVPEWVSRDVSSASTCATALNVDESAAKGGGNSGASSSVLYCSIENNNNNNNNNNNNNNNNNSADGGAASSFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSLATPYVSLALKSVSKHFRCLKNAISDQLKLTCEVLGEDFSIPTTSTGSKFDNNMARLRCMDQSFQKNKSGGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGVTTEARQHHQTSSKNDQLASASEGSNNQPKSDNQPAHRFGGAHASHSHAIPEKQFQCLEMGSSSSACNEEQIGMEEDQWNQEKRSKLDCQITTTTPSMDGTVMGFMPYRRSGLEGLGSVSLTLGLRHGVEGVQQQQLQQEEELRRQFGGHMIYDFVG* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1487 767 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 739 - -
Gso11g1487 767 SMART HOX_1 538 602 IPR001356 GO:0003677
Gso11g1487 767 CDD homeodomain 538 599 IPR001356 GO:0003677
Gso11g1487 767 SMART prehox3 299 480 IPR006563 -
Gso11g1487 767 SUPERFAMILY Homeodomain-like 540 604 IPR009057 -
Gso11g1487 767 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 32 739 - -
Gso11g1487 767 Pfam Associated with HOX 304 479 IPR006563 -
Gso11g1487 767 Gene3D - 541 603 - -
Gso11g1487 767 MobiDBLite consensus disorder prediction 239 265 - -
Gso11g1487 767 MobiDBLite consensus disorder prediction 615 644 - -
Gso11g1487 767 MobiDBLite consensus disorder prediction 241 265 - -
Gso11g1487 767 Pfam Homeobox KN domain 555 594 IPR008422 GO:0003677|GO:0006355
Gso11g1487 767 ProSiteProfiles 'Homeobox' domain profile. 535 598 IPR001356 GO:0003677
Gso11g1487 767 MobiDBLite consensus disorder prediction 611 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1487 Gso-Chr11 17303751 17311180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1487 380 607 Homeobox Transcription Factor Family AT4G34610 51.316 2.93e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso11g1487 POX 4.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1487 - - gmx:100810379 1425.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1487 11 17303751 17311180 Gso11g1487 11 17303751 17311180 ECH
Gso12g0638 12 6053366 6060710 Gso11g1487 11 17303751 17311180 GST
Gso12g1479 12 37845270 37853015 Gso11g1487 11 17303751 17311180 PCT
Gso11g3363 11 49485655 49493022 Gso11g1487 11 17303751 17311180 PCT
Gso11g1487 11 17303751 17311180 Gso12g1479 12 37845270 37853015 PCT
Gso11g1487 11 17303751 17311180 Gso11g3363 11 49485655 49493022 PCT