Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1477 ATGGCTGATATTGAGGGTTCTCCAGGAAGCTCCATGCATGGAGTAACTGGAAGGGAACAAACCTTCATAGCCTCAGTGGCTTCCCCTATGGTCCCTACAGACACCACAGCAAATTTCGCTTTGCCAGTAGATTCTGAGCACAAGGCAAAAATTTTCAAGCTTTTTTCCTTAGCCAACCCTCACATGAGAACCTTCCACTTGTCTTGGATATCCTTCTTCACTTGCTTTGTCTCAACCTTCGCGGCGGCGCCACTTGTCCCCATCATTCGCGACAACCTTAACCTCACCAAAGGCGACATCGGGAACGCCGGCGTTGCCTCTGTCTCCGGCAGCATCTTCTCCAGGCTCACAATGGGCGCGGTTTGTGACCTACTTGGACCGCGTTACGGCTGTGCCTTCCTCATCATGCTCTCTGCACCAACCGTGTTCTGCATGTCTTTTGTGAATGATGCTGCTGGTTACATAGCAGTGAGGTTCATGATAGGGTTTTCGTTGGCCACTTTTGTTTCATGCCAGTATTGGATGAGTACTATGTTTAATAGTAAGATTATAGGGCTTGTGAATGGGACTGCTGCAGGGTGGGGGAACATGGGTGGTGGGGCCACTCAGCTCATAATGCCTATGGTTTATGAGTTGATTAGAAGAGCTGGGGCTACTCCCTTTACGGCTTGGAGGATTGCTTTCTTCGTCCCTGGTTGGATGCATGTGGTCATGGGGATCTTGGTCCTAACCCTAGGCCAAGATTTACCTGATGGAAACCTTGGTGCCTTGCAGAAGAAGGGTAATGTTGCCAAAGACAAATTCTCCAAGGTGCTATGGTATGCCATAACAAATTACAGGACATGGGTTTTTGCCCTCCTCTATGGGTACTCGATGGGAGTTGAATTAACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTCAAGCTACACACTGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAATCTCCTAGCTCGTCCCTTTGGTGGATACACTTCTGATGTTGCAGCCAGGTTGTTTGGCATGAGGGGCAGGCTTTGGAACCTGTGGATCCTCCAAACCCTAGGAGGCGTTTTCTGCATATGGCTTGGGCGTGCCAATTCCCTTCCCATTGCAGTCTTGGCCATGATCCTCTTCTCCATTGGTGCTCAAGCTGCATGCGGTGCAACTTTTGGCATCATTCCCTTCATCTCAAGGCGTTCTCTTGGGATCATATCAGGCCTAACTGGTGCAGGTGGAAACTTTGGTTCTGGTTTGACCCAATTAATCTTCTTTTCAACCTCAAGGTTTTCTACTTCCACTGGTCTCTCCCTTATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCTCAGTGGGGTAGCATGTTCCTCCCTCCTTCAAAGGATGTCAACAAGTCCACTGAGGAATACTATTACACCGCTGAGTGGAATGAGGAAGAGAAGCAAAAAGGGTTGCACCAGAATAGTCTCAAGTTTGCTGAGAATAGCCGTTCAGAGAGAGGTAAGCGTGTGGCCTCAGCACCAACACCACCAAACACAACTCCAACTCATGCCTAG 1593 0.4859 MADIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKIFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKGDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPMVYELIRRAGATPFTAWRIAFFVPGWMHVVMGILVLTLGQDLPDGNLGALQKKGNVAKDKFSKVLWYAITNYRTWVFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWNLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSRFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVNKSTEEYYYTAEWNEEEKQKGLHQNSLKFAENSRSERGKRVASAPTPPNTTPTHA* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1477 530 MobiDBLite consensus disorder prediction 492 530 - -
Gso11g1477 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Gso11g1477 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Gso11g1477 530 MobiDBLite consensus disorder prediction 492 513 - -
Gso11g1477 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Gso11g1477 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Gso11g1477 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 526 - -
Gso11g1477 530 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Gso11g1477 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 526 IPR044772 GO:0015112
Gso11g1477 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1477 Gso-Chr11 17134621 17137784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1477 1 529 Inorganic Solute Cotransporters AT5G60770 81.285 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1477 K02575 - gmx:100807710 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1477 11 17134621 17137784 Gso11g1477 11 17134621 17137784 ECH
Gso12g1483 12 37997654 38000116 Gso11g1477 11 17134621 17137784 PCT
Gso11g3360 11 49427228 49429848 Gso11g1477 11 17134621 17137784 PCT
Gso11g1477 11 17134621 17137784 Gso12g1483 12 37997654 38000116 PCT
Gso11g1477 11 17134621 17137784 Gso11g3360 11 49427228 49429848 PCT