Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1471 ATGGGTGTCAATAAACAAACCAGTTTTCCAATGCAGAAAGCAGGGTACGGTGGCGATGGAATATACAGGTCTCTAAGGCCTTGTTTGGTTCTCCCAAATGACCCCAACCTCTCCCTCGTCTCATTCCTCTTCCAAAGCGTTTCCTCTTTCCCATCCAAAATCGCCCTCGTCGATTCCCACTCTTCCCAAACACTTACCTTGGCGCACCTCAAATCACAGGTCGCCAAACTTGCCCACGGTTTCCTCAAACTAGGCATAAACAAAAACGACGTCGTCCTACTGCTCGCTCCCAACAGCATCCACTACCCTATATGCTTCCTCGCTGCCACCGCCATCGGCGCCGTCGTCTCCACCGCCAATCCCATTTACACAGTCAACGAAATCTCGAAGCAAGTCGACGACTCCAACCCCAAACTCCTCATCACCGTCCCAGAATTATGGGACAAAGTCAAGAACCTCAACCTCCCCGCCGTAATTATCGATACGGAAACAGCTCAAGGTTCTCACTTATTTTTCGCTCGGTCCAGACTCGTGAGTTTCGAAGCTGGCAACGAGGTGTCGAGAATAACGAGTCTTGACGCGGTGATGGAGATGGCTGGACAGGCGACGGAGCTGCCGGAGAGCGGCGTGAAGCAGGGGGACACGGCGGCGCTTCTGTACTCCTCGGGAACGACGGGGTTGAGCAAGGGCGTGGTTCTGACGCACCGGAACTTCATAGCGGCGTCGGTGATGATCGGAATGGACGACGACCTCGCCGGGGAGCAAGACGACGTGTACCTGTGCGTTCTGCCGATGTTTCACGTGTTCGGGCTGGCGGTGGTGACGTACGCGGCGCTGCGGCGAGGGAGCGCGGTGGTGGTGATGGAGAGGTTCGAGCTGGAGGCGCTGCTGAAGGCTATTGAGAAGCAGAGGGTGACGAAGCTGTGGGTGGTGCCTCCGATCCTGCTTGGTCTGGCGAAACAGAGCGTGGTTGGAAACTACGATCTTTCCTCGTTGAGGCGTATAGGTTCGGGTGCTGCTCCTCTCGGGAAAGACTTGATGGAAGAGTGTGGCAGGCGTTTTCCTCATGTTGCCATTTGTCAGGGTTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGGTTCGTCATACTGGCTCAACGGGAACGCTAGTTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGGGACCTAACATGATGCAAGGCTATCACAACAATCCAGAGGCCACGAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCACTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAAGCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTAACATTCATCAACAATGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCACGATCCAAAATATAA 1704 0.5123 MGVNKQTSFPMQKAGYGGDGIYRSLRPCLVLPNDPNLSLVSFLFQSVSSFPSKIALVDSHSSQTLTLAHLKSQVAKLAHGFLKLGINKNDVVLLLAPNSIHYPICFLAATAIGAVVSTANPIYTVNEISKQVDDSNPKLLITVPELWDKVKNLNLPAVIIDTETAQGSHLFFARSRLVSFEAGNEVSRITSLDAVMEMAGQATELPESGVKQGDTAALLYSSGTTGLSKGVVLTHRNFIAASVMIGMDDDLAGEQDDVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQRVTKLWVVPPILLGLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQGYGMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLRRVTFINNVPKTASGKILRRELTAKARSKI* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1471 567 Pfam AMP-binding enzyme 45 469 IPR000873 -
Gso11g1471 567 Pfam AMP-binding enzyme C-terminal domain 478 553 IPR025110 -
Gso11g1471 567 ProSitePatterns Putative AMP-binding domain signature. 218 229 IPR020845 -
Gso11g1471 567 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 566 - -
Gso11g1471 567 Gene3D - 465 566 IPR045851 -
Gso11g1471 567 Gene3D - 20 464 IPR042099 -
Gso11g1471 567 CDD 4CL 31 559 - -
Gso11g1471 567 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 14 566 - -
Gso11g1471 567 SUPERFAMILY Acetyl-CoA synthetase-like 29 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1471 Gso-Chr11 17073401 17079366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1471 11 567 Monolignol Biosynthesis Gene Families AT4G05160 67.864 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1471 K01904 - gmx:100808944 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1471 11 17073401 17079366 Gso11g1471 11 17073401 17079366 ECH
Gso11g3354 11 49341553 49346755 Gso11g1471 11 17073401 17079366 PCT
Gso11g1471 11 17073401 17079366 Gso11g3354 11 49341553 49346755 PCT