Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1458 ATGATAGTTCCCGCCATTTGTATCATCTTTCCCGGCAATTGCTCATTTTCGCATTGCTTCCCTCCTCCCTTCTGTCGCTCTCTCTTCTCTTCCCCTCTTTCTCTCTCTCTCCGCACCAAGTCCAAGCCTCCCTCCGCCTTCGACGCCCTCATGTCCGGCGCACGCGCCGCCGCCAAGAAAAAATCCCAATCCCAACCATCCCCCAAGAAACGCAAAACTCCATCCTCTCAAAACCCTAGCAACCTCAAAACCCTTACACCGCAAGAACCCGCCGTTAAACCGGAAGAACACACCGTTAAGCCCGAACCGCTGAATGCCCCTCCCGTGCCATCTTCTTCGAAGGAGAAGACTGCGGAGCTGAAGAAGCAAGTTCCCCAGCTGAAGAAGAAACCCTCAGATTTCGATCCTGCTTCGATAACCGCATGGGAGAAAGGCCAGCCTGTGCCGTTTCTATTTCTCTGCTTGGTCTTCGACATCATTTCTCAAGAATCCAAAAGAATTGTAATCACTGACATTGTTTGCAATCTTCTGAGGACTGTTATGCACTGCACGCCGGAAGATCTCGTCAAGGTCGTTTACCTCTCTGCAAACCGGATCGCGCCCGCCCACGAAGGGGTGGAATTGGGAATTGGCGAGGCTTCCATCACCAAGGCGCTTGCTGAGGCGTATGGAACAAATGAGGCCTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCTTCGCAGCCCATGATTATGATGTTTAAGCCTGAAGTATTGACTATTAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATATGGGAAAGAAAGTCAAGAGAAGAAAAAGAATCATATGAAGGCACTTCTTGTTTCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGTCAAAGTTGCGAATTGGCTATGCTGAGAAAACTCTCTTAGCTGCATTAGGTCAAGCTGCAGTATACACTGAAGAACACTCTAAACTGCCTCCTGATATTCAGTCTCCTTTAGAAGAGGCTTCGAACATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTTTGGATGCTTCCAAAGAAATGTAATTTTACTCCTGGTGTTCCAATTGGACCTATGCTGTCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACCTGGAGAATGGCTCAGTTGAGATTTACAGTAGACATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCTGTTTCAAGGTTAAAGAAACCAACTGTATCATCATTAATTCTTGATTGTGAAATTGTTGCATATGATCGTCAAACACAGACGATCCGTTCTTTCCAGGCGCTTAGTACTCGGGCTCGCAAGAATGTAGAAATGGAAGATATAAAGGTTGATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAGCCTGGATTTCTTCAGTTTGCAACAACGATAACATCAAATGATGTTGAGGAAATACAGAAGTTTCTTGACCAAGCTGTTGGTGCAAGTTGTGAGGGGTTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTTTGAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAGTGACAACGAAGAATTTCAAAGTATTTGCAAGATAGGAACGGGATTCTCTGAAGCAGTGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGTTTGATTTCAGGCATACTATAGATTTGGAGAATCAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGGCATATCTCTTCGATTTCCACGACTACTTCGAGTCAGGCCTGACAAATCTCCCGAACAGGCCTCATCATCTGAGCAGGTTGCTGAAATGTATAACGCTCAAAAACAAAATCACACGATCAACCAAAATGACGATGAAGATGATGATTGATTGA 2238 0.4401 MIVPAICIIFPGNCSFSHCFPPPFCRSLFSSPLSLSLRTKSKPPSAFDALMSGARAAAKKKSQSQPSPKKRKTPSSQNPSNLKTLTPQEPAVKPEEHTVKPEPLNAPPVPSSSKEKTAELKKQVPQLKKKPSDFDPASITAWEKGQPVPFLFLCLVFDIISQESKRIVITDIVCNLLRTVMHCTPEDLVKVVYLSANRIAPAHEGVELGIGEASITKALAEAYGTNEAWIKTQYQKKGDLGLVAKESRSSQPMIMMFKPEVLTIRKVFNTFRLIAKEYGKESQEKKKNHMKALLVSATDCEPQYLIRLLQSKLRIGYAEKTLLAALGQAAVYTEEHSKLPPDIQSPLEEASNIVKQVYSVLPDYDKIISALLTEGLWMLPKKCNFTPGVPIGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRHAERNTGKFPDVVAAVSRLKKPTVSSLILDCEIVAYDRQTQTIRSFQALSTRARKNVEMEDIKVDVCIFAFDLLYLNGQALLQENLRVRREHLYASFEEEPGFLQFATTITSNDVEEIQKFLDQAVGASCEGLIIKTLNEDATYEPLKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSDNEEFQSICKIGTGFSEAVLEERSSSLRSKVIPKPKFDFRHTIDLENQSILMSGLKPVRAYLFDFHDYFESGLTNLPNRPHHLSRLLKCITLKNKITRSTKMTMKMMID* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1458 745 MobiDBLite consensus disorder prediction 54 133 - -
Gso11g1458 745 Gene3D - 403 602 - -
Gso11g1458 745 Gene3D DNA ligase/mRNA capping enzyme 422 547 - -
Gso11g1458 745 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 385 603 - -
Gso11g1458 745 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 207 679 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gso11g1458 745 PANTHER DNA LIGASE 1 60 677 - -
Gso11g1458 745 Pfam ATP dependent DNA ligase domain 393 597 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso11g1458 745 MobiDBLite consensus disorder prediction 115 129 - -
Gso11g1458 745 ProSitePatterns ATP-dependent DNA ligase signature 2. 571 597 IPR016059 GO:0003909
Gso11g1458 745 Pfam DNA ligase N terminus 149 326 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso11g1458 745 ProSiteProfiles ATP-dependent DNA ligase family profile. 499 635 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso11g1458 745 CDD Adenylation_DNA_ligase_I_Euk 382 600 - -
Gso11g1458 745 Gene3D - 606 691 IPR012340 -
Gso11g1458 745 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 131 384 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso11g1458 745 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 60 677 - -
Gso11g1458 745 MobiDBLite consensus disorder prediction 58 87 - -
Gso11g1458 745 Gene3D - 124 395 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso11g1458 745 SUPERFAMILY Nucleic acid-binding proteins 605 677 IPR012340 -
Gso11g1458 745 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 417 425 IPR016059 GO:0003909
Gso11g1458 745 Pfam ATP dependent DNA ligase C terminal region 622 673 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1458 Gso-Chr11 16908526 16915868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1458 41 676 Core DNA Replication Machinery Family AT1G08130 66.718 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1458 K10747 - gmx:100803989 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1458 11 16908526 16915868 Gso11g1458 11 16908526 16915868 ECH
Gso12g0659 12 6407958 6415731 Gso11g1458 11 16908526 16915868 GST