Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1455 ATGGACACAATGGATTTTCAACAAGAGACTCTCGTGCACATTAATGACTTTGTTGAAGATCCCAACTTAGATCAGTTCATCAATTTGATTCGTTGGGAGCATAAAGATGCTATCTGTAACTTCAATTCTGAGCTTATCAATGAAGCATTCATTGATAACTCATTCCTGTCACACCCTGCAATCCCATTTGATCAGTGCAATGGTAATTCTGTGAATGTTTATGATCCAATTAGCTCTACACATAGCTCCTTCTCTTGTTTTGATGGGGAAGCCAAGGAAGAAGAAGGAGGAGGAGAAGAAGAAGATAACATGGGGGATACTTCTGCTGCTACAACAACAAGAACTAAAAGTCTTAATAATAAGCCAATACCAAAAACTGATAGGTCCAAGACTTTGGCTTCTGAGAGGAGGAGAAGAGAACGAATGAAGGAGAAGCTTTATACATTGCGGTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCTGTTTCATATATGCATGAACTTCAAGCACAAGCCAGCATGCTGAAGGCTGAGGTTGAAGGACTTGAAACATCCTCATTGAATTCCAAAAATTACCAAGGATTGATTGAAAACCCCATGAGGGTTCAATTGATCACCAACAAGAAGATAATCCAGATGGACATGTTTCAAGTGGATGAAAAAGGGTTTCATGTGAAAATAATGTGCAATAAAGGAGAAGGTGTGGCTGCCTCATTGTACAAGTCTCTCGAGTCTCTGACAGGCTTCAATGTTCAGAATTCAAACTTGACCACAATTTCTGATCGCAGTTTTCTACTTACATTTTCATTGAATGCGAAAGGCCCTGAGCCAGAAATTAACCTGCCCAACTTGAAGTTATGGGTGACTGAAGCTTTTGTGAAACAAGGCTTTGAATTCATACCTTTTTTTTATGCTTGA 939 0.393 MDTMDFQQETLVHINDFVEDPNLDQFINLIRWEHKDAICNFNSELINEAFIDNSFLSHPAIPFDQCNGNSVNVYDPISSTHSSFSCFDGEAKEEEGGGEEEDNMGDTSAATTTRTKSLNNKPIPKTDRSKTLASERRRRERMKEKLYTLRSLVPNITKMDKASIIGDAVSYMHELQAQASMLKAEVEGLETSSLNSKNYQGLIENPMRVQLITNKKIIQMDMFQVDEKGFHVKIMCNKGEGVAASLYKSLESLTGFNVQNSNLTTISDRSFLLTFSLNAKGPEPEINLPNLKLWVTEAFVKQGFEFIPFFYA* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1455 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 191 IPR036638 GO:0046983
Gso11g1455 312 MobiDBLite consensus disorder prediction 85 140 - -
Gso11g1455 312 SMART finulus 132 181 IPR011598 GO:0046983
Gso11g1455 312 Coils Coil 172 192 - -
Gso11g1455 312 Pfam Helix-loop-helix DNA-binding domain 132 176 IPR011598 GO:0046983
Gso11g1455 312 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 308 - -
Gso11g1455 312 MobiDBLite consensus disorder prediction 105 127 - -
Gso11g1455 312 Gene3D - 118 192 IPR036638 GO:0046983
Gso11g1455 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Gso11g1455 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1455 Gso-Chr11 16877100 16878738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1455 4 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 48.598 4.55e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g1455 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1455 - - gmx:100778649 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1455 11 16877100 16878738 Gso11g1455 11 16877100 16878738 ECH
Gso12g1497 12 38286926 38288757 Gso11g1455 11 16877100 16878738 PCT
Gso11g3345 11 49241973 49243752 Gso11g1455 11 16877100 16878738 PCT
Gso11g1455 11 16877100 16878738 Gso12g1497 12 38286926 38288757 PCT
Gso11g1455 11 16877100 16878738 Gso11g3345 11 49241973 49243752 PCT