Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1453 ATGGAGATGGAAGGGTTGGATTCTAATAATTCTACCCACAACGGCATAGCCAAGGGCAAACGCACCAAGAGGATGAGGCTTTTGTCCCCTTGCGGTGTTGTTGCTACCACTGTCACCTCGAGCACTTCGAGTGCCTCCTCCACCACAACCTACGAGAGCGAAGAGGAAGACATGGCGAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCATCATCATCCTCCTCGTCACGACAAGCAACAAGTTGAAGATCATGGTCTTGAGAATTGTGATGGTGTCATCAAGACAGAAGAAAAGGGTAACAACAACAGCGACAACGTTAACGCTACCCCCACCGCAACAACAACAACCGCTGCTACTACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACCTTCCCTTCGTTTCAAGCGCTGGGTGGACACAGGGCGAGTCACAAAAAGCCAAAACTCGCGGCTGAAGAGAAAAAACAACCATTGCCACCACCAGCGCAACCGTCACCACCGTCTCAATTGCAACACATGATTGTTACCAACTATGATCGGTTTGAGGAGGGTAACGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTAATAATGGAAACAACAAGGGTAAGATTCACGAGTGTTCCATTTGTGGTTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACACCAATACTACTGTTGTTGATACAACAAGGTGTAACACTGTTTCCACCACTATCATCACCACGGCTCCACCAAGGAATATTTTGCAATTGGATCTTAACCTCCCAGCACCCGAAGACGATATCCGGGAGGCTAAGTTCCAATTTGCAACAACAACAACTCAGGTGCTGGTTGGTACTCCGGCTTTGGTGGATTGTCATTATTAG 927 0.4714 MEMEGLDSNNSTHNGIAKGKRTKRMRLLSPCGVVATTVTSSTSSASSTTTYESEEEDMANCLILLAQGGESHHHPPRHDKQQVEDHGLENCDGVIKTEEKGNNNSDNVNATPTATTTTAATTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLAAEEKKQPLPPPAQPSPPSQLQHMIVTNYDRFEEGNVKSGPPISLQLGNNGNNKGKIHECSICGSEFTSGQALGGHMRRHRASTNTNTTVVDTTRCNTVSTTIITTAPPRNILQLDLNLPAPEDDIREAKFQFATTTTQVLVGTPALVDCHY* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1453 308 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g1453 308 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Gso11g1453 308 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g1453 308 Pfam C2H2-type zinc finger 129 154 - -
Gso11g1453 308 Pfam C2H2-type zinc finger 214 238 - -
Gso11g1453 308 SMART c2h2final6 214 236 IPR013087 -
Gso11g1453 308 SMART c2h2final6 129 151 IPR013087 -
Gso11g1453 308 SUPERFAMILY beta-beta-alpha zinc fingers 128 236 IPR036236 -
Gso11g1453 308 Gene3D Classic Zinc Finger 127 236 - -
Gso11g1453 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Gso11g1453 308 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Gso11g1453 308 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 308 - -
Gso11g1453 308 MobiDBLite consensus disorder prediction 145 176 - -
Gso11g1453 308 PANTHER ZINC FINGER PROTEIN ZAT5 1 308 - -
Gso11g1453 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1453 Gso-Chr11 16852925 16854306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1453 3 308 C2H2 Transcription Factor Family AT2G28200 41.194 3.13e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1453 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1453 - - gmx:100782408 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1453 11 16852925 16854306 Gso11g1453 11 16852925 16854306 ECH
Gso3g1568 3 41613824 41614942 Gso11g1453 11 16852925 16854306 ECH
Gso12g0663 12 6479416 6480728 Gso11g1453 11 16852925 16854306 GST
Gso12g1500 12 38316887 38318171 Gso11g1453 11 16852925 16854306 PCT
Gso11g3343 11 49217803 49219166 Gso11g1453 11 16852925 16854306 PCT
Gso11g1453 11 16852925 16854306 Gso12g1500 12 38316887 38318171 PCT
Gso11g1453 11 16852925 16854306 Gso11g3343 11 49217803 49219166 PCT