Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1450 ATGATGCCAAAGGCCACAATATCTACTACCCCCACAAATGATTTTCAAGAACTGCATATGTTTCCTGCAGCAGTGAATAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCATCACCTTCACACTCATCTTCAAACTCTCTCCTCTTCTACCTCTCACTTCTCAAGGACAAGCTAGGTCAACTCCACAACCTAGTTGGTGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACCATCAATAACACAATCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGCCAGCAAATGATTTCTAGTTCCCCTTCAGGTACTAATACTATTAATGAATTGCACCAGCAACAAATTGATCATGGTAGATTATTACCACCATCACATCATGAATCAAACTTTATCAACAACAATAGGGGTGTGCCTAGTAACATTAACATAGTCTCACATATAAATAGAGGGCAAAGTTTCTTATCTAATAGTATTGAGGGAGAGGCATCATTGGATTGGTTTGCTGAAAGCTACAATAATAGCAATAGTGGTAATAATTATTTTAACCCTAAGGATGATGAAGCAGCCAACATTATTAACAACATCATGGGGGAGACGAGTGATGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGATGCTAATTTGAGGATGCACATGAGGGCACATGGGGAAGAGTACAAAACAAGTGCAGCTTTGCGCAACCCAATGAAGAAAAACAACAAAAAGGAGAGTAATTTGTTGTTTTTAGGTGCAGAAGGAAGTGTGACAAAGAGATATTCGTGCCCTCAACAAGGGTGTAGATGGAACCAAAGGCATGCCAAGTTCCAACCTTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCCAAGATGTATATGTGCAATAGGTGCAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACTATCCCAAGTGGCAGTGCTCGTGTGGCACTACGTTTTCTAGGAAGGACAAGCTTATGGGCCATATTACTTTGTTCGCGGGGCACACCCCAGTTCCTAATATTAATGGCATGTCATCATACATGGGAAAATCAGAAGTACAACAGAATAATATTGCTGGTGGTTTAAGATGA 1233 0.4152 MMPKATISTTPTNDFQELHMFPAAVNNEYLVSPSLEASSSSSPSHSSSNSLLFYLSLLKDKLGQLHNLVGVLVSPQQNLPESTPTAISTINNTIQEIIVAATSMRFTCQQMISSSPSGTNTINELHQQQIDHGRLLPPSHHESNFINNNRGVPSNINIVSHINRGQSFLSNSIEGEASLDWFAESYNNSNSGNNYFNPKDDEAANIINNIMGETSDDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALRNPMKKNNKKESNLLFLGAEGSVTKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYMCNRCNQKQFSVLSDLRTHEKHCGDYPKWQCSCGTTFSRKDKLMGHITLFAGHTPVPNINGMSSYMGKSEVQQNNIAGGLR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1450 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Gso11g1450 410 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Gso11g1450 410 SUPERFAMILY beta-beta-alpha zinc fingers 230 257 IPR036236 -
Gso11g1450 410 Gene3D Classic Zinc Finger 224 294 - -
Gso11g1450 410 Gene3D Classic Zinc Finger 327 378 - -
Gso11g1450 410 SMART c2h2final6 329 351 IPR013087 -
Gso11g1450 410 SMART c2h2final6 291 324 IPR013087 -
Gso11g1450 410 SMART c2h2final6 232 254 IPR013087 -
Gso11g1450 410 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 14 399 IPR044300 GO:0010044|GO:0010447
Gso11g1450 410 PANTHER OS08G0562300 PROTEIN 14 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1450 Gso-Chr11 16832581 16834578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1450 26 385 C2H2 Transcription Factor Family AT5G22890 48.352 4.01e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1450 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1450 - - gmx:100802399 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1450 11 16832581 16834578 Gso11g1450 11 16832581 16834578 ECH
Gso12g0665 12 6495143 6496474 Gso11g1450 11 16832581 16834578 GST
Gso12g1501 12 38330328 38332792 Gso11g1450 11 16832581 16834578 PCT
Gso11g3342 11 49208510 49210733 Gso11g1450 11 16832581 16834578 PCT
Gso11g1450 11 16832581 16834578 Gso12g1501 12 38330328 38332792 PCT
Gso11g1450 11 16832581 16834578 Gso11g3342 11 49208510 49210733 PCT