Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1446 ATGGCTATTGCTGGTTTACACAGTGTGTCTGTGCTCGACTCTTCTTTCTTGAGGGACTCCCATTCCCAGTCGTCTGGGAGAGGGGGAGATGGAAGACGGGGAAGCACCCGGTCATCTTCGCTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGATCTGGTGAAGTACCTCTTGAACAAAGGAGGGATGGGTTGGTTGCGGACCTTTCACGAGAAGATAGACTGGATATCCAAGAAAGAGGGCAGCGACATGTTATAGAAGATACCGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCGCAAAGTCAGAATGAATCCCATGATGGTAACGAGGACTTAAACAATTCCAGCTGTGAGAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCATGTATCAAACATTTCTGAAAGAAATAACGGTTCAAGGGGAGAATGGCTTGGGGAAACCGAGCAGGAAAGGGTGAGAGTTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCGTCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGACACACAAATTGAACGTGTGCGTGATGGACTCATTGTTAACCAGATTGGGGGCCAAACTGAGCATACACGGAGGGGAATACGTAAATTATGTGGCCGACAAGCTATGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAATTCATGAGTTATTGGACCATCGGGCAGTGTCGCAATTCCCCTATCGAAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTTGATAATAACAGGCCCCTTTCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGAAGACAAACTGTATCAGGTCTAAGGGAGGGATTTTTCGCTAGAAGGGAGAATAGTGGTTGCAGTCAAGCAACCAGCAATGCATCTGATACGTCATCTAATGTTGAAATTGATTTTAATACGAATGAACAAATGGGATCAAGCAGTTCACATATAGTCCCAAGTGTACATTCTGAAGAGTCTGACCCTAATGACAGAGGAAGCAATGGACTTGGGGTATCAGGCAGCCAGAACTGGGTACGAGGTACCACATGTGAGAATTTACATTGGCAAGAATCTACTGCTCAAGTAGATGAGTTGCAGCATTTGCCAATTGAATCACTAGATTGTCAATCGTCATTAAGTGCTGATGTTGAGAGAGGGGACAACACTGAGCAAAATCTTGATGTGATGCCAACTGAAGATAATGCTAATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCAGAGCATTGTAATAATGAAGAATTCAGTGAGGTGCATAATGAGCAATCTGAGTTAGGTGATATAAATAATAGTGAAAACTATTCTTCAAATTACAATATTCATATGGAGGATAATGTTGTTAATGGTGTAAATTGGAATGAATCTGGTGCTCTAGAAGGAGAGCAGCCAGAAGAAGTTTCTGAAAATGAAGGAAGTGAGTGGTATCAGAATAATACCGAATGGAGAAATAGCACTGAGGAAAATGTTGATGATAATCATCTCAGTAATACACCAAATGAGTGGCCTGAAAACAGTTTGGGAAACGAAGATGGAGAAAATTCTCGTCTGCAAGAATCCCATGAAGTGTGGCAAGAAGATGGTGGCTTCCAAGGGGCTGTGGAAAATTGGTTGGGAGGAACTTCTGATCATGAAAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGAGAACTTCTTAGTAGGAGAAGTGTCTCTAACCTCCTTGGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTAACATTGACTGGGAGTTGCAAGAAACAACCCCTTCTTCTGCCTCAGTAGAGCAGGACCTTGAGCAGCAGAGTAGGGATCAAATTGTTGGTCAGGAGGAGGGTACTGTTAATAGTCCACTTAACCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTATTTGGGACCAGCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCATCTAGTAATTGATTTGGAGATTATTAACGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAACGATCTATAAGGCAAGAAGTTTCTGCAGCTCTAAATCGCTCTGCTGGTTCATCAGGAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTAAGAAAAGGACTTTGCTGCATATGCTGTGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCGAATGAGTTGCTTCAAAGCAGAAGGAAGTGCCCAATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAA 2583 0.4286 MAIAGLHSVSVLDSSFLRDSHSQSSGRGGDGRRGSTRSSSLLQMWREIEDEHVVNQVQGRSGEVPLEQRRDGLVADLSREDRLDIQERGQRHVIEDTVLGENESETWSQSQSQNESHDGNEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNISERNNGSRGEWLGETEQERVRVIREWVQMSSQQRSVSSGENREEPSAEIDTQIERVRDGLIVNQIGGQTEHTRRGIRKLCGRQAMLDMLKKAERERQREIHELLDHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRRQTVSGLREGFFARRENSGCSQATSNASDTSSNVEIDFNTNEQMGSSSSHIVPSVHSEESDPNDRGSNGLGVSGSQNWVRGTTCENLHWQESTAQVDELQHLPIESLDCQSSLSADVERGDNTEQNLDVMPTEDNANEITQQSLRIEDSEHCNNEEFSEVHNEQSELGDINNSENYSSNYNIHMEDNVVNGVNWNESGALEGEQPEEVSENEGSEWYQNNTEWRNSTEENVDDNHLSNTPNEWPENSLGNEDGENSRLQESHEVWQEDGGFQGAVENWLGGTSDHESAPVGRIRGFYFPEDDNVYSVELRELLSRRSVSNLLGSSFRESLDQLIQSYVERQGHANIDWELQETTPSSASVEQDLEQQSRDQIVGQEEGTVNSPLNLPSLPIPPPLPIWDQHHHRDNWSQNDINNQHLVIDLEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDCESPEDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVVEVIRAYSIQ* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1446 860 Coils Coil 736 763 - -
Gso11g1446 860 MobiDBLite consensus disorder prediction 544 566 - -
Gso11g1446 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 858 IPR013083 -
Gso11g1446 860 Pfam Zinc finger, C3HC4 type (RING finger) 805 852 - -
Gso11g1446 860 CDD mRING-HC-C3HC5_NEU1 808 846 - -
Gso11g1446 860 Coils Coil 243 263 - -
Gso11g1446 860 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 860 - -
Gso11g1446 860 MobiDBLite consensus disorder prediction 538 567 - -
Gso11g1446 860 PANTHER PROTEIN, PUTATIVE-RELATED 1 860 - -
Gso11g1446 860 MobiDBLite consensus disorder prediction 18 39 - -
Gso11g1446 860 MobiDBLite consensus disorder prediction 192 211 - -
Gso11g1446 860 SUPERFAMILY RING/U-box 807 853 - -
Gso11g1446 860 MobiDBLite consensus disorder prediction 353 368 - -
Gso11g1446 860 MobiDBLite consensus disorder prediction 353 389 - -
Gso11g1446 860 ProSiteProfiles Zinc finger RING-type profile. 808 847 IPR001841 -
Gso11g1446 860 MobiDBLite consensus disorder prediction 101 132 - -
Gso11g1446 860 MobiDBLite consensus disorder prediction 99 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1446 Gso-Chr11 16771732 16777084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1446 808 854 C3H Transcription Factor Family AT3G06140 42.553 1.51e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1446 - - gmx:100801329 1664.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1446 11 16771732 16777084 Gso11g1446 11 16771732 16777084 ECH
Gso12g0671 12 6567238 6572856 Gso11g1446 11 16771732 16777084 GST
Gso12g1504 12 38374952 38380101 Gso11g1446 11 16771732 16777084 PCT
Gso11g3337 11 49161963 49173492 Gso11g1446 11 16771732 16777084 PCT
Gso11g1446 11 16771732 16777084 Gso12g1504 12 38374952 38380101 PCT
Gso11g1446 11 16771732 16777084 Gso11g3337 11 49161963 49173492 PCT