Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1445 ATGGAATTCTGGAACCGCAGATTGCTACTACAGAACGAGGACGTTCCACTCTCCATGCCACCTCTCTCTCACACTCACACCAAACATGCCACAAATGCATCATCATCATCCTCGCCGCCACAATCTTCATCATTCCAATTCCAAAGCCCTCTGCAAGTGTCGATTCGTCCCGTTTTTTCTTCGAGCGTGGCCTACGTCTTCCTCATCCTCTTCACCACCTTCTTCTTCATCGGCTTCGTCTTCCTCTACTTCCGCCAGTTCGCCTCCGACGCGGCCACTTTCCGCCGCCGTCATCCGCCACGCCGGGAGGAGGAGGAGGACGCCGCGGCGGCGGCGTCAGCGAAGAAGTGTCTGCCGGTGGTGGGGCACCGCGGGGGGTGCGCAGAGTGCGCGATATGTCTTGAGGAGCTGCGAGAGGGGGACGCGGTGAAGGTGATTCCGTACTGCAAGCACGTGTTCCACCCGCACTGCATTGACACGTGGCTCGATAAGCAAGTCACGTGCCCCGTGTGCCGGTGCAGTGAGCTTTGTGGAGCGGCGCAACAGAGTGGAGAAGAGGTGGGGTCGGTGTCAGCGACAAGACAACAAGTAGAACAAGAAGAACAAGAAGTGGTTCCAATTCCAAATTTGGATTAG 636 0.5708 MEFWNRRLLLQNEDVPLSMPPLSHTHTKHATNASSSSSPPQSSSFQFQSPLQVSIRPVFSSSVAYVFLILFTTFFFIGFVFLYFRQFASDAATFRRRHPPRREEEEDAAAAASAKKCLPVVGHRGGCAECAICLEELREGDAVKVIPYCKHVFHPHCIDTWLDKQVTCPVCRCSELCGAAQQSGEEVGSVSATRQQVEQEEQEVVPIPNLD* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1445 211 MobiDBLite consensus disorder prediction 184 202 - -
Gso11g1445 211 Pfam Ring finger domain 129 172 IPR001841 -
Gso11g1445 211 SMART ring_2 130 171 IPR001841 -
Gso11g1445 211 MobiDBLite consensus disorder prediction 19 43 - -
Gso11g1445 211 PANTHER RING-H2 FINGER PROTEIN ATL57 34 199 - -
Gso11g1445 211 SUPERFAMILY RING/U-box 129 174 - -
Gso11g1445 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 176 IPR013083 -
Gso11g1445 211 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Gso11g1445 211 MobiDBLite consensus disorder prediction 184 211 - -
Gso11g1445 211 MobiDBLite consensus disorder prediction 24 43 - -
Gso11g1445 211 CDD RING-H2_PA-TM-RING 129 172 - -
Gso11g1445 211 PANTHER RING FINGER DOMAIN-CONTAINING 34 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1445 Gso-Chr11 16766866 16767501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1445 59 176 C3H Transcription Factor Family AT2G27940 35.461 2.18e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1445 - K10664 gmx:102663476 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0672 12 6576452 6577418 Gso11g1445 11 16766866 16767501 GST