Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1439 ATGTCTCGTCGCGGTGGCTCTAAACAACAACCAGATTCACGCCATCCAGCACCACCGTCTGCGGCGCCTTCTCCCGCCGGAAGAGGACGCGGCCGTGGCCGCGGAGAATTCTCCTCAGTTCCCGCTCCTTCTCCGGTGAATGCACCATCCGCTCCTCCTCCGGCTTCCACCATCGGCGTTCCTTCCGGCGCCGCACCTGTTCGTGCCGCGTCTCCGTCTCCGGCGGCAGAATCTCTCACTTCCGCTGTCGAAAAGCAACTTACATTGCAACCGTCGGCGCCTTCGTCGACGAAGGCGGTGAGGTTCAGTGAACGGCCAGGGTTCGGTCTTGTAGGGAAGAAAATCAAAGTTCGAGCGAATCATTTCCAAGTCAAAGTCGCTGAACAAGATCTATTTCATTATGACGTCTCTATCAATCCGGAGATTAATTCGAAGAAGGTTTGCAGAGATGTTATGACTCTGCTTGTTCAAGCGCACCGTGAAAAGTTTCTTGGAAATCGCATACCGGCCTACGATGGGCGAAAGAGTCTTTTCACCGCCGGACCCTTGCCCTTCGAATCGAAGGATTTTGTGATCGTGCTGAAGGATGAAGATGAACCAGGCTCGTCTTCTTCCGCGCCTGCTAGAAAAAAACGTGAACGCGAGTTTAGGGTCACCATCAGGTTTGCTTCCAGGACTGACCTTCACCATCTCGGGCAGTTTCTCAGGCGTCGTCAGTTGGATTGTCCTTATGAAACTATTCAGGCTCTTGATGTTGTTCTGCGTGCTACTCCATCTGAAAGGTTCGATGTGGTGGGAAGATCGTTTTTCTCGCCTTTTTTGGGGAAACCTGGAACGCTTGGTAGCGGAACGGAGTATTGGAGGGGCTATTACCAGAGCCTTCGTCCAACTCAGATGGGCCTGTCTCTAAATATTGATGTGTCAGCAAGGGCGTTTTATGAAGCTATTCCTGTGATTGATTTCATTCAAATCCATTTTAGGCTCAATCCTTCCAAGCCTCTGCCTGATCAGGATCGAATCAAGCTTAAGAGAGCATTGAGAGGAATCAAGGTAGAAGTTAATCACGGAAAGAATCTTAGACGTTACAAGATCACTGGAGTCACAAAAGAACCACTCAGAGAGTTAATGTTTACTCTTGATGACAAAAGAACAAAAAGCTCAGTTGTTCAATATTTTCATGAGAAATACAATATTGTGTTGAAGCATACACATCTTCCTGCTCTTCAAGCTGGCAGTGACAGTAAACCAATTTTTTTGCCTGTTGAGCTTTGTCAAATTGTTGCTGGACAGAGATATACAAAGAGATTGAATGAGGAGCAAGTAACTAATCTTTTAAGGGCAACTTGTCAGCGTCCTCATGATAGAGAAAACTCTATCAAACAGGTTGTGAAGCAAAGTAATTTCAGCACAGACAAATTTGTGTGTCACTTTGGAATTCAAGTGAAGGAGGAACCAGCATTGCTTGATGCTCGGGTTTTGCCTCCCCCAATGCTAAAATATCATGGCACAGGTAGAGAATCATGTGTTCAACCCAGAACAGGTCAATGGAATATGATTGATAAGAAAATGGTTAATGGTGGCGCTGTGCAGCATTGGACTTGCCTCAACTTTTCTGGAAAAACAAACCGAGGTTTGGCAGCTTCATTTTGTCAAGAGTTGGCCAAAATGTGTAATAACAAGGGCATGCGTTTTAACTTGGATCCTTTGCTGCCCATAACATCTGTTCATAGTAGTCAAGTAGAGAGTGCTCTTGGGAATGTGCATAAGCAGGCTATTGCAAAACTAGCAAACGAAGGAAGACTCGAATTATTGATCATAATTTTGCCTGATTTGAAGGGATCCTATGGGAAAATAAAGCGTATTTGTGAAACTGAGTTAGGGATAGTATCTCAGTGTTGTCTTCCGAGGCATGTTTACCAGATGAAGCCACAATATCTTGAAAATGTGGCCCTCAAGATAAATGTGAAGGTTGGTGGCAGTAACACAGTATTGAATGATGCATTTACTAGAAGAATTCCTCACGTGTCTGACTTACCAACAATAATCTTGGGTGCAGATGTAACACATCCACAGCCAGGGGAAGATTATAGTCCTTCTATTGCTGCAGTAGTTGCATCAATGGATTGGCCTTATGTAACAAAGTACAGAGGAGTTGTTTCTGCTCAAACTCACCGTGAAGAAATCATCCAAGATCTTTATAATACACATGAAGATCCTGTGAGGGGAAAGACACATTCGGGAATTATCAGGGAATTACTTCGTGCTTTCCGTTTATCAACTAAGACTAAGCCAGAGAGGATTATATTCTACAGAGATGGAGTAAGTGAGGGCCAATTCAGCCAGGTTTTGCTGTACGAGATGGATGCAATACGACGCGCTTGTGCCTCACTACAAGAAGACTATATGCCCCGTGTTACTTTTGTGGTGGTCCAGAAAAGACACCACACAAGGTTATTTCCTGCAGAACACGGAAGTCGTGATCAGACAGATAAAAGTGGAAATATATTGCCAGGGACTGTCGTGGACACTCAAATATGCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATACAAGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAATAACTTCACTGCTGACGAGTTGCAAATGCTTACAAATAACTTGACTTATACGTATGCAAGGTGTACTCGATCAGTCTCAATAGTTCCGCCTGCATATTATGCACATTTGGCTGCCTTCAGGGCTCGCTATTACATGGAAGGTGAAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGACTGCTAACTTTGAGGTTAAATTGCCTTCGGTTAAGGAAAATGTGAAAGATGTGATGTTCTTCTGTTGA 2877 0.4487 MSRRGGSKQQPDSRHPAPPSAAPSPAGRGRGRGRGEFSSVPAPSPVNAPSAPPPASTIGVPSGAAPVRAASPSPAAESLTSAVEKQLTLQPSAPSSTKAVRFSERPGFGLVGKKIKVRANHFQVKVAEQDLFHYDVSINPEINSKKVCRDVMTLLVQAHREKFLGNRIPAYDGRKSLFTAGPLPFESKDFVIVLKDEDEPGSSSSAPARKKREREFRVTIRFASRTDLHHLGQFLRRRQLDCPYETIQALDVVLRATPSERFDVVGRSFFSPFLGKPGTLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPVIDFIQIHFRLNPSKPLPDQDRIKLKRALRGIKVEVNHGKNLRRYKITGVTKEPLRELMFTLDDKRTKSSVVQYFHEKYNIVLKHTHLPALQAGSDSKPIFLPVELCQIVAGQRYTKRLNEEQVTNLLRATCQRPHDRENSIKQVVKQSNFSTDKFVCHFGIQVKEEPALLDARVLPPPMLKYHGTGRESCVQPRTGQWNMIDKKMVNGGAVQHWTCLNFSGKTNRGLAASFCQELAKMCNNKGMRFNLDPLLPITSVHSSQVESALGNVHKQAIAKLANEGRLELLIIILPDLKGSYGKIKRICETELGIVSQCCLPRHVYQMKPQYLENVALKINVKVGGSNTVLNDAFTRRIPHVSDLPTIILGADVTHPQPGEDYSPSIAAVVASMDWPYVTKYRGVVSAQTHREEIIQDLYNTHEDPVRGKTHSGIIRELLRAFRLSTKTKPERIIFYRDGVSEGQFSQVLLYEMDAIRRACASLQEDYMPRVTFVVVQKRHHTRLFPAEHGSRDQTDKSGNILPGTVVDTQICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENNFTADELQMLTNNLTYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGETSDSGSASGGRTANFEVKLPSVKENVKDVMFFC* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1439 958 SMART DUF1785_2 263 315 IPR014811 -
Gso11g1439 958 Pfam N-terminal domain of argonaute 113 254 IPR032474 -
Gso11g1439 958 Pfam Argonaute linker 1 domain 265 314 IPR014811 -
Gso11g1439 958 ProSiteProfiles PAZ domain profile. 316 428 IPR003100 GO:0005515
Gso11g1439 958 CDD Piwi_ago-like 476 922 IPR045246 -
Gso11g1439 958 Gene3D - 672 958 IPR036397 GO:0003676
Gso11g1439 958 SUPERFAMILY Ribonuclease H-like 590 923 IPR012337 -
Gso11g1439 958 SMART PAZ_2_a_3 320 459 IPR003100 GO:0005515
Gso11g1439 958 Pfam Mid domain of argonaute 511 589 IPR032473 -
Gso11g1439 958 MobiDBLite consensus disorder prediction 1 78 - -
Gso11g1439 958 Pfam Piwi domain 605 922 IPR003165 GO:0003676
Gso11g1439 958 CDD PAZ_argonaute_like 315 427 - -
Gso11g1439 958 Pfam PAZ domain 341 445 IPR003100 GO:0005515
Gso11g1439 958 SUPERFAMILY PAZ domain 311 468 IPR036085 GO:0005515
Gso11g1439 958 Pfam Argonaute linker 2 domain 454 500 IPR032472 -
Gso11g1439 958 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 67 940 - -
Gso11g1439 958 Gene3D - 492 666 - -
Gso11g1439 958 PANTHER ARGONAUTE1 67 940 - -
Gso11g1439 958 SMART Piwi_a_2 603 923 IPR003165 GO:0003676
Gso11g1439 958 Gene3D paz domain 310 432 - -
Gso11g1439 958 ProSiteProfiles Piwi domain profile. 603 923 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1439 Gso-Chr11 16642819 16648756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1439 62 958 Eukaryotic Initiation Factors Gene Family AT1G48410 58.785 0.0 1089
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1439 K11593 - gmx:100799033 1851.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1439 11 16642819 16648756 Gso11g1439 11 16642819 16648756 ECH
Gso12g0678 12 6675021 6680990 Gso11g1439 11 16642819 16648756 GST