Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1430 ATGGAACCGCCGGTTGCACGATCGAGAGGCCGCCCGAGGAAGCGGAGAAGAGAGGAGGAGGAAAAGAAGAACGAGAATGAGGCAAAGCGGCAAGCGATGGGGACGCGAGCCGTTGCATTGGTGGGAAAGTATGTGTTGAAGGATTTTGCCGGAAACGGAGTGTTTCTCGGGAAAGTCATTTTTTACGAGTGTGGTCTGTATAGGGTGAGTTATGAGGATGGCGATTTCGAGGACCTAGACAGTTCAGAGGTCCGTGCCATTCTCGTAAAGGACGACGAATTCGGTAAAGACATGGCGCAGCGGAGGGTCGTGCTGGAGAAGTTAGTGGCGAAGAACAGTGTGAAGGCTGAATTGGATAAAGGCGGTGATGAAGGGAAGAAGGAGGAATCGGCCGTTGAAGTGACCGGATCGAAAGGTGAGTCAGGGGCTGAGAACAATGGAGGGGAGGAAAATGATGACGATAATGAATCATCAAGTGACTCGGGCTTGGAGGGAAGCGAGCCTGGGATTGATGAGGAGTCACTGCCGCCGCTGCCGGAGTTTCCGTCGTCTTCCGGCACCATTGGTGTACCGGAGGAGTCTGTATCACTTTTGTTTGCTGTATACGGATTCCTCAGATCATTCAGCACTCGCTTGTTTCTTATGCCATTCACTCTGGACGAGTTTGTGGGTGCTGTGAATTGCCGTGTTCCGAACAGCGTGTTCGATGCCGTTCACGTTTCGTTGATGAAAGTGTTGCGGCGGCATCTGGAATCCCTCTCATCGGAGGGCTCGGAGATTGCTTCCAAATGCCTCGGGTGCAATGATTGGAGCTTGCTGGATTCATTGACTTGGCCAGTCTTTGTAATTCAGTATTTAGTCGTCAGTGGACACACAACTGCTCATGAATGGCGAGGATTTTACAAAGAGGTTGCCACTGATGAATATTATTTGTTGCCTGTGAGTAGGAAGTTGATGATATTGCAAATTCTCTGTGATAATGCTTTGGAATCTGAGGAGATTGTAACAGAAATGAACATTCGGAGGGAATCAGAGGTTGGGGTGGATTATGATGGAGAGGATATCCTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGATACGCCAATACTTTAGCTTGCGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTCTGTTTCATATTCCAGAGATACAGAAGGCACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTTTGTGGCATGGATGGGATCCTGCTTTGTTGTGATGGATGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCCGAGTGCAAAATCAATATGATGGGGCCAACCATTGCAAAGGGAACATTACTTCGAGGGGCAGAAATATTTGGAAAGGATTTGTACGGGCAACTCTTTGTGGGTTCCTGCGAACACTTACTAGTGCTGAATATTGGGAATGATGAATTTTGTCATAGATATTACAATCTGAATGACATTCCCAAGGTTCTCAAAGTGCTTTATGGATCCACGGAGCACAGGGCTATATACCATGATATTTGCATGGCTGTGCTTCAATATTGCAATGTTCCAGAGAGTACTTTATTATTTCCTCCTTTGGGTGAAACCCCTCTAAGTCCTGCTACTCGATGCAATGGCAATGGTAGCAGCAACGAGTGCCCTCCTTCCAAATGCTCTTTGGTAAATGGTCAATTTTGTAATTATGACCATGCAAATGATTCAGCTCCTATAATTCTTTCTTCCCAAACCAAAGAAAGCACCCAAGCAGGTTTTGAAAAGTGTGAACGCAATGTAATCAATGATCCTGCATACATGGGTTTCTCTTATAAGCCTTTGTTGTACAATAATTACTATGCACATGGCTATTTTGCTGCATCAGCAGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGATCAGATGGCCATGCATCAGACAATCAGAGGAAAAATGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAAAATGCTGCAAAAATGCTTGCTGGTTTTTCTTCTATAAGAAGTGGAGAGGGAGTACTCCCTAGTATTGCAACTTACATTATATACATGGAGGAATGTCTACATGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGACAATGGCGTAAGCAAGTGGAACAGGCCACAACATTTAGTGCTATCAAGCCACTTTTACTTAAACTTGAGGAGAACATTCGAACGATTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCTACTCTTGGAACAGCACAGAAACGTGCACCAAGTGGTAGGCGTTACAAGAAGCGGTCAGCAAATGATGAAGCTACAGCTGAGGGTTGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTCTTGCCAAAATCCATGGTCAGAAAAGCAGCACGTCAAGGTGGTTCACGGAAAATTTCTGGCATTTTTTATGCTGATGGCTCTGAAATTCCCAAGAGAAGCAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCCGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGCTGTTATGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTTTTCAAATAGAGCAAGATCCAGAAAGAAAGGAAAAGTATTGGTTTTTCGAAACACGCATTCCTTTATATTTGATAAAAGAGTATGAAGAAGGTAATGGAAACATGCCATGTAATGAGGAGCACTTGAATACTGCATCTGAGTTGCTGTACAGAAGGCGGTTGAAGGCTATCTGCAAGGACATATTTTTGTACCTTACTTGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTCTTTTAATTCGGGATGCTCACAAGTGCAATGCATGCCAAGGTTACTGTCATGAGGGTTGTTCCACAAGATCAACAGTCTCGGCAAATGAAGTTGTGTACTTGACCACATGCAAGCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAGAATAATAATGAATCGCCAACCAGTCCATTACTCCTACAAGGACGAGAGAATAACTCTGGGACATTTTTGAAGGGTTCAAGGCCTAAATCTCATGATCAAGTACTAAAATCTTCCAGGACAAAGGCTAATAATCCCAGCATGAAACAAGTTACTCCTGTGACAGCTTTGAAAGGAACAAAGGCTAAATATTATGAACAAGAACCAACTTCTCCCGGGACAAAGGATAATAATCATTTTGACATGCCTCAAGTTGCTTCTGAGGCCACTTCAACAGGAAAAAAACCTCGCAAAAATTGTTCTTGGGGTCTTATATGGCAAAAGAAAAATAATGAAGATACAGACAATGATTTCTGGCTCAGAAACATACTTTTAAAAGGGAGTTCAAACATGCCACAATTAAAACCTGTTTGTCACTTGTGTCGGAAGCCATATATGTCTGATCTGACGTATATTTGCTGTGAGACATGCCAAAATTGGTATCACGCTGAAGCCGTTGAACTTGAAGAATCCAAAATTTCTAGTGTGTTAGGCTTCAAATGTTCCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCTAAGAGACAAGAGGGCAAGAAGTCACGCACAAAGACTAAAAAGAAAGAGCATTCTGGAGCAGATTCCAATTCTGGAGCAATCTATTATGGTATGAGAGAGTATGAAGCTGCTACTCCTGCCTTTCCAGTAGAGGATGGTTCTACTCCTGTCTTTAATGTAGAGGATGATCCTACTCACCTCTTTCCTGTAGAGGGTGATCCTACTCCGGTCTTTCCTGTGGAGGATGATCCTCTTCTTTTCTCTCTTCCGAGTGTTGAGCTGATAACAGAACCCAAGATGGAAGGGGATGTTGAGTGGAACAGTGTCTCTGGGCCAGGGCTTCGGAAACTGCCAGTGAGAAGGAATGTTAAGCATGAAGGGGACGGTGATGTTTCTTTTGGAGGTATGCCTGCAGAGGTATCTCTACCTTTAGAATATGCCTCTGCTGTTGACTTTGACAACAAGCTGCTGAATGACTCTGATAATGTAAACTATGATGATTACATGGATTTTGAACCCAATACCTATTTCTCTCTAACGGAACTGCTGGAGCCAGATGATGGTAGTCAATTTGAGGGATTAAATGTGTCTGGGGACTTGTCAGGATATTTGGAAAATTCTAGTACCCTTTTTCCTGAAGAATGTGGAGATGTTATAACAGAACCTACACTTTCCTTGCAAGACACCGGCTTTAGTTGTATGCAATGTTCACAAATGGAACCAGCCCCTGATCTCTTTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCGCCTTGGGTTGAAGTACCATCTAGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGGGATTGGTAA 4848 0.4367 MEPPVARSRGRPRKRRREEEEKKNENEAKRQAMGTRAVALVGKYVLKDFAGNGVFLGKVIFYECGLYRVSYEDGDFEDLDSSEVRAILVKDDEFGKDMAQRRVVLEKLVAKNSVKAELDKGGDEGKKEESAVEVTGSKGESGAENNGGEENDDDNESSSDSGLEGSEPGIDEESLPPLPEFPSSSGTIGVPEESVSLLFAVYGFLRSFSTRLFLMPFTLDEFVGAVNCRVPNSVFDAVHVSLMKVLRRHLESLSSEGSEIASKCLGCNDWSLLDSLTWPVFVIQYLVVSGHTTAHEWRGFYKEVATDEYYLLPVSRKLMILQILCDNALESEEIVTEMNIRRESEVGVDYDGEDILPSEVGLRRVQPRYANTLACEDKEATKFVSASNAVNQPGSSVSYSRDTEGTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMMGPTIAKGTLLRGAEIFGKDLYGQLFVGSCEHLLVLNIGNDEFCHRYYNLNDIPKVLKVLYGSTEHRAIYHDICMAVLQYCNVPESTLLFPPLGETPLSPATRCNGNGSSNECPPSKCSLVNGQFCNYDHANDSAPIILSSQTKESTQAGFEKCERNVINDPAYMGFSYKPLLYNNYYAHGYFAASAAAKFALLSSEESRSDGHASDNQRKNASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCFSCKAPASSKRGCMLNHAALSATKNAAKMLAGFSSIRSGEGVLPSIATYIIYMEECLHGLVVGPFLSASYRRQWRKQVEQATTFSAIKPLLLKLEENIRTIAFCGDWVKLMDDWLVEFSMVQSATSTLGTAQKRAPSGRRYKKRSANDEATAEGCPENFVWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKISGIFYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDNKLVEGKSCYGIAFGSQKHLPSRVMKNVFQIEQDPERKEKYWFFETRIPLYLIKEYEEGNGNMPCNEEHLNTASELLYRRRLKAICKDIFLYLTCKRDNLDVVSCSVCQMGLLIRDAHKCNACQGYCHEGCSTRSTVSANEVVYLTTCKQCYHARLLAQKENNNESPTSPLLLQGRENNSGTFLKGSRPKSHDQVLKSSRTKANNPSMKQVTPVTALKGTKAKYYEQEPTSPGTKDNNHFDMPQVASEATSTGKKPRKNCSWGLIWQKKNNEDTDNDFWLRNILLKGSSNMPQLKPVCHLCRKPYMSDLTYICCETCQNWYHAEAVELEESKISSVLGFKCSKCRRIKSPVCPYSDLKPKRQEGKKSRTKTKKKEHSGADSNSGAIYYGMREYEAATPAFPVEDGSTPVFNVEDDPTHLFPVEGDPTPVFPVEDDPLLFSLPSVELITEPKMEGDVEWNSVSGPGLRKLPVRRNVKHEGDGDVSFGGMPAEVSLPLEYASAVDFDNKLLNDSDNVNYDDYMDFEPNTYFSLTELLEPDDGSQFEGLNVSGDLSGYLENSSTLFPEECGDVITEPTLSLQDTGFSCMQCSQMEPAPDLFCEICGILIHSQCSPWVEVPSRLGSWRCGNCRDW* 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1430 1615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1276 1335 IPR013083 -
Gso11g1430 1615 Pfam DDT domain 193 249 IPR018501 -
Gso11g1430 1615 Pfam PHD-finger 418 460 IPR019787 -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 1339 1367 - -
Gso11g1430 1615 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 295 339 IPR028942 -
Gso11g1430 1615 ProSiteProfiles DDT domain profile. 192 252 IPR018501 -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 118 134 - -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 1 32 - -
Gso11g1430 1615 SMART testlast3 192 252 IPR018501 -
Gso11g1430 1615 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1198 1613 - -
Gso11g1430 1615 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1197 - -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 146 160 - -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 1182 1198 - -
Gso11g1430 1615 SMART PHD_3 417 460 IPR001965 -
Gso11g1430 1615 SMART PHD_3 1568 1613 IPR001965 -
Gso11g1430 1615 SMART PHD_3 1281 1329 IPR001965 -
Gso11g1430 1615 SMART PHD_3 1088 1136 IPR001965 -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 388 410 - -
Gso11g1430 1615 ProSitePatterns Zinc finger PHD-type signature. 418 459 IPR019786 -
Gso11g1430 1615 PANTHER PHD FINGER FAMILY PROTEIN 1198 1613 - -
Gso11g1430 1615 PANTHER PHD FINGER FAMILY PROTEIN 1 1197 - -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 118 187 - -
Gso11g1430 1615 CDD PHD2_CHD_II 418 459 - -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 13 30 - -
Gso11g1430 1615 Coils Coil 15 35 - -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 1146 1205 - -
Gso11g1430 1615 SUPERFAMILY FYVE/PHD zinc finger 390 461 IPR011011 -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 388 402 - -
Gso11g1430 1615 MobiDBLite consensus disorder prediction 1146 1171 - -
Gso11g1430 1615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 466 IPR013083 -
Gso11g1430 1615 ProSiteProfiles Zinc finger PHD-type profile. 415 462 IPR019787 -
Gso11g1430 1615 SUPERFAMILY FYVE/PHD zinc finger 1280 1335 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1430 Gso-Chr11 16541444 16550274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1430 18 1615 PHD Transcription Factor Family AT5G35210 44.362 0.0 1199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso11g1430 DDT 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1430 - - gmx:100796377 3184.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1430 11 16541444 16550274 Gso11g1430 11 16541444 16550274 ECH