Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1429 ATGGAGCAACAGAACCATACGACGGACACTGATCAGTTTTTGATCCTGGGCCCCACACCGAATGAGCCACACACTCCAATGGCGCACGTCAACGTCGCCGACACCAACAACAACGTTGTTGGCGGCGCAGTTAACGTTGGAATTGGTTCTGGTTCGGCGCATGTTGTGGCCGTAGCGAAATCCGAGACTGTAGGTTCGGGACAGGCGGTGAAGAGAGGGAGGGGGAGGCCTCGGAAGAACGACATTGTCGAAAACGCGGTGTCGCCGGCGACGGGGCCGCCGGGATTTTCCGATCAGGCTGCCAAGAGAGGCAGGGGACGTCCCCGTGGTTCTAGGAAACTGCAGATTCTAGCTTCCATTGAAACAGCTGGGGGAAGCATCATACCTCACGTGCTGACTGTGAAAACTGGAGAGGATTTGGTCAGCACGATAATGTCATTTTTTGACAAAGACCCTCAAGCAATTTGCATACTTTCTGCCACTGGTGCTGTTTCAGATGTGGCCATTCGCCAAAATGGTGCTTCTCATGTTATTACGAGACTCGAGGGTACGTTTGAGATATTGTCTTTATCTGGAGCATTTACCTACGCTAATAGCCCTACTGGTCCAGTTAGTAAAACTGGCTCGTTGAGTATTTCATTGGCTAGAACTGATGGGAGGGTTTTTGGAGGTATTCTTGAGAGCGCATTGGTAGCAGCATGCCCTATTCAACTTGTTATGGCCTCTTTCAAGCAAAACATCAGCAGCCAACAAATCAAGAGAAAACAGTTGTCTGAATCTTCTAATGCACCCCTAATGCTGTGCAATTCAGATTCAGAAAGGGACCAACTGAAACTTCTAAAGTTGACGGAAGGTGGTGACAAGAGTTGTCCTTCACCACCACCAACAACAACACTTGAGCCAACAACAGCAACAACTAATGGTGTAGCGGATAATGTCTTTACTGCAACATCCAATGGAGTGGTTGATAATGTTTTTCTTCAAAATCAAATTGTGCACTCTGCCTCTGTTAATGGTGTTGCTGATTTGGACAGCCAGGCCCCGCAGCCCGCATCAGACTATTCTGACCAAATGACTCATGCAGATGTGAATGCAAGTGTCATTGTCTTATGA 1113 0.4834 MEQQNHTTDTDQFLILGPTPNEPHTPMAHVNVADTNNNVVGGAVNVGIGSGSAHVVAVAKSETVGSGQAVKRGRGRPRKNDIVENAVSPATGPPGFSDQAAKRGRGRPRGSRKLQILASIETAGGSIIPHVLTVKTGEDLVSTIMSFFDKDPQAICILSATGAVSDVAIRQNGASHVITRLEGTFEILSLSGAFTYANSPTGPVSKTGSLSISLARTDGRVFGGILESALVAACPIQLVMASFKQNISSQQIKRKQLSESSNAPLMLCNSDSERDQLKLLKLTEGGDKSCPSPPPTTTLEPTTATTNGVADNVFTATSNGVVDNVFLQNQIVHSASVNGVADLDSQAPQPASDYSDQMTHADVNASVIVL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1429 370 PRINTS AT-hook-like domain signature 71 81 IPR017956 GO:0003677
Gso11g1429 370 PRINTS AT-hook-like domain signature 100 111 IPR017956 GO:0003677
Gso11g1429 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 249 - -
Gso11g1429 370 Gene3D - 129 262 - -
Gso11g1429 370 CDD DUF296 129 243 IPR005175 -
Gso11g1429 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 359 IPR039605 GO:0003680
Gso11g1429 370 MobiDBLite consensus disorder prediction 63 112 - -
Gso11g1429 370 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Gso11g1429 370 MobiDBLite consensus disorder prediction 284 305 - -
Gso11g1429 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 244 IPR005175 -
Gso11g1429 370 PANTHER DUF296 DOMAIN PROTEIN 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1429 Gso-Chr11 16501085 16504964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1429 97 243 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.664 7.06e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1429 - - gmx:102660361 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0688 12 6815800 6819720 Gso11g1429 11 16501085 16504964 GST