Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1427 ATGGATGCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGTCAGACCGTGACAGTTGACCCAATGGATCCTGTGGATTCATACATACACATATCTCAGGTTGCGCTCGGAGAGGCGAAAAAGGAGAAACCTAATGAGTCTGTGGTTTTGTATTTGAAAGTTGGTGAACAGAAGATTGTCTTGGGAACCCTTTCTAGGGATGGCATTCCTCATCTATCGTTGGATTTGGTTCTGGACTCCGATTCCGAGCTTTCCCACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGGTACAGAGTACTAACTGGTGGCAACAATGCTTCTGATTTTTCTGATAGTGAAGAGGATGAGGAACTTGCATTGGAGGGTCAAGATAATGATGAAGGTGCAAAGGTTACCAAACCTTCTAAACCTGTTCCCAAGATTGGTGCCCCAGCAAAAACAGCTGATCCTAAGAAAGACAAGGGTGATGATTCTGATGATGAATCGGATGATGATCTTGCTGGTGAAGATGAATTTGGAAGTTCCGATGAGATGGATGATGACAGCGATAGTGATGAGGAGAGTGATGAAGAGACCCCTGCTAAGAAGGTGGATCAGGGCAAGAAGAGACCAAATGAGTCTGCAGCAAAAACTCCTGTTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTAATGGTAAGAAAAATGTACATGTAGCAACTCCCCATCCTTCGAAGAAAGGTGGAAAGACACCCAACAGTACAAAAGGCCAGTCTCCCAGTTCTGCTGGACAACTATCTTGCGCAAGTTGTAAAAAGTCTTTCACCAACGAAGTCGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGA 870 0.446 MDAPMEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKEKPNESVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYRVLTGGNNASDFSDSEEDEELALEGQDNDEGAKVTKPSKPVPKIGAPAKTADPKKDKGDDSDDESDDDLAGEDEFGSSDEMDDDSDSDEESDEETPAKKVDQGKKRPNESAAKTPVSAKKAKTATPEKTNGKKNVHVATPHPSKKGGKTPNSTKGQSPSSAGQLSCASCKKSFTNEVGLQQHKKAKHGGQ* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1427 289 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Gso11g1427 289 MobiDBLite consensus disorder prediction 108 264 - -
Gso11g1427 289 MobiDBLite consensus disorder prediction 191 207 - -
Gso11g1427 289 MobiDBLite consensus disorder prediction 244 264 - -
Gso11g1427 289 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 285 - -
Gso11g1427 289 MobiDBLite consensus disorder prediction 160 190 - -
Gso11g1427 289 Gene3D Nucleoplasmin core domain 2 104 - -
Gso11g1427 289 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Gso11g1427 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 289 IPR013087 -
Gso11g1427 289 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1427 Gso-Chr11 16443726 16446721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1427 5 100 C2H2 Transcription Factor Family AT3G44750 54.167 1.53e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1427 NPL 9.4e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1427 - - gmx:100802220 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1427 11 16443726 16446721 Gso11g1427 11 16443726 16446721 ECH
Gso12g0691 12 6871939 6875298 Gso11g1427 11 16443726 16446721 GST
Gso12g1523 12 38645720 38648999 Gso11g1427 11 16443726 16446721 PCT
Gso11g3321 11 48990333 48993435 Gso11g1427 11 16443726 16446721 PCT
Gso11g1427 11 16443726 16446721 Gso12g1523 12 38645720 38648999 PCT
Gso11g1427 11 16443726 16446721 Gso11g3321 11 48990333 48993435 PCT