Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1416 ATGGAATTTGAGATCATCAACGAATCTCCAGCTGATTCCACTTCACTATCCTCCTCTTCAGTCTCACCATGCACACCACCAAACCCTAATCTGTTATGTGATTCTCCAAATCCACAACCAAATACTAATACCAATCCATCTCACAAGAGAAAAGCAGGTAGAAAGAAGTTTAGGGAGACACGCCACCCAGTGTTTAGGGGTGTACGGCAAAGAAACGGGAACAAATGGGTGTGTGAAATAAGGGAACCAATAAAAAAATCAAGGGTTTGGGTAGGGACATACCCTACTCCTGAAATGGCAGCTAGGGCACATGACGTGGCTGTCTTGGCACTTAGTGGCACCTCAGCGAAGTTCAATTTCCCCGATTCAGTTTCGCTTCTTCCACTTGCAAAGTCACACTCTGCTGTAGATATAAGAGAAGCAGCAAAAGCTGCTTCTATTGAAGCTTTCATACCAAACACAGCCTTTTCTTCCTCTCATAACAATTCTAATTTTGGTGAAAATGGGAATGCTGAAGACACTTGTTTGAACATTGGCATGCACGACGATGAGTCAGAAACAATGTTCTTTGATGAGGAGGCAGTGTACAATATGCCAGGTTTGTTGGATAGTATGGCAGAGGGTTTGCTTATTACCCCTCCTTCTATGAAGAGAGCAATGGATTGGGACGATATTGGTTGTGTAATAGACCTTACTCTGTGGACAAATTAA 711 0.4304 MEFEIINESPADSTSLSSSSVSPCTPPNPNLLCDSPNPQPNTNTNPSHKRKAGRKKFRETRHPVFRGVRQRNGNKWVCEIREPIKKSRVWVGTYPTPEMAARAHDVAVLALSGTSAKFNFPDSVSLLPLAKSHSAVDIREAAKAASIEAFIPNTAFSSSHNNSNFGENGNAEDTCLNIGMHDDESETMFFDEEAVYNMPGLLDSMAEGLLITPPSMKRAMDWDDIGCVIDLTLWTN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1416 236 MobiDBLite consensus disorder prediction 1 62 - -
Gso11g1416 236 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Gso11g1416 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 236 IPR045277 GO:0003700
Gso11g1416 236 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Gso11g1416 236 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gso11g1416 236 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gso11g1416 236 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 236 - -
Gso11g1416 236 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Gso11g1416 236 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gso11g1416 236 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gso11g1416 236 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Gso11g1416 236 MobiDBLite consensus disorder prediction 8 28 - -
Gso11g1416 236 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1416 Gso-Chr11 16304291 16305722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1416 49 235 AP2-EREBP Transcription Factor Family AT4G25490 48.936 8.63e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g1416 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1416 - - gmx:100793751 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1416 11 16304291 16305722 Gso11g1416 11 16304291 16305722 ECH
Gso12g0701 12 7007597 7008441 Gso11g1416 11 16304291 16305722 GST
Gso12g1534 12 38786338 38787111 Gso11g1416 11 16304291 16305722 PCT
Gso11g3311 11 48895635 48896386 Gso11g1416 11 16304291 16305722 PCT
Gso11g1416 11 16304291 16305722 Gso12g1534 12 38786338 38787111 PCT
Gso11g1416 11 16304291 16305722 Gso11g3311 11 48895635 48896386 PCT