Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1415 ATGGCGGCGACAGAGAGCACAGTAACTTCAAACCCTAGCAACAGAGAACGACCAAAGCCAAAGCCAAAGCTACTAGTCATAACGGGCCCCACCGCTTCCGGGAAGTCGAAGCTAGCCGTTGATTTGGCCTCCCACTTCCCCGTCGAACTCATCAACGCCGATTCCATGCAGGTCTACCGCGGCCTCGATGTTCTCACCAACAAACTCCCTCTCTCTCACCAGAACGGAGTTCCGCATCATCTCTTGGGTACCGTAAGCCCCAACGTGGAATTCACTGCCAAAGCGTTTCGGGATTCCGCTATTCCCATTATTGATGATATATTGGCTCGTAATCACTTGCCTGTTATAGTTGGGGGCACTAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTTTAGATGATTCTGCAGAAGATATGGATGAAAGCTGTTTGGGTGATCCAACTGGGTCTGGTAACAATTTCATTGGTGAAAATGACTGTTCAAACAATAGTTATGACCTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAATTTGTACAATCGCACTGGTGTTCTTCCTAGCAATATTTTTCAAGGAAAGGCAGCAGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGCATGAGGGATTACTCAATGAAGTCTATGGCATTTATAACTTGAATGCAGTTTATACTAGAGGTTTGCGGCAAGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGCATGAAAGAGAGAGGGAATTGACTGAAGGATCCAGCATAGAAAAGGGAGAGACATTATTTAATCATAATTTGATGGAGTTGGTGAGATCTTCCTCTAATACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGCTTAATACCCGAAGACTTGTTCGCCGTCAGAAGAGGATGCTCAGTCGACTGCAAACTCTGTTTGGTTGGAACATACACTATGTTGATTCCACAGAATCAATATCAAGCAAATCAGAAGATGTATGGACCCGGCAAGTGGTTGAATCTGCTGTGAAGATAGTCAAATCTTTCCTGAGTGAGAATGGAACCATCTTTGGGACGTCAAATGACACGGGGATGAAAATAATCCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGCGGAGATCGTGTGCTTAGAGGATTTCATGAATGGGAGCAACACAGACAAGGTCGAGGGCACCGAAAACGTATATCTCGTCTTAAGAGAAAGGCACAAGTTCCTGGTTTCGTGGAAGAGGTGAAGTATTCTGTGTCTGAACAGTTAGATATTTAA 1437 0.4308 MAATESTVTSNPSNRERPKPKPKLLVITGPTASGKSKLAVDLASHFPVELINADSMQVYRGLDVLTNKLPLSHQNGVPHHLLGTVSPNVEFTAKAFRDSAIPIIDDILARNHLPVIVGGTNYYIQALVSPFLLDDSAEDMDESCLGDPTGSGNNFIGENDCSNNSYDLLKDIDPVAANRIHPNNHRKINQYINLYNRTGVLPSNIFQGKAAEKWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMHEGLLNEVYGIYNLNAVYTRGLRQAIGVREFEPLLRTCVVKDMHERERELTEGSSIEKGETLFNHNLMELVRSSSNTESTILLEEAIEKVKLNTRRLVRRQKRMLSRLQTLFGWNIHYVDSTESISSKSEDVWTRQVVESAVKIVKSFLSENGTIFGTSNDTGMKIIQRDLWTQYICKACGDRVLRGFHEWEQHRQGRGHRKRISRLKRKAQVPGFVEEVKYSVSEQLDI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1415 478 Pfam IPP transferase 57 351 - -
Gso11g1415 478 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 - -
Gso11g1415 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 263 IPR027417 -
Gso11g1415 478 Gene3D - 157 209 - -
Gso11g1415 478 Gene3D - 22 418 IPR027417 -
Gso11g1415 478 Gene3D Classic Zinc Finger 419 464 - -
Gso11g1415 478 Hamap tRNA dimethylallyltransferase [miaA]. 24 378 IPR018022 GO:0008033
Gso11g1415 478 TIGRFAM miaA: tRNA dimethylallyltransferase 25 294 IPR018022 GO:0008033
Gso11g1415 478 MobiDBLite consensus disorder prediction 1 15 - -
Gso11g1415 478 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 IPR039657 -
Gso11g1415 478 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1415 Gso-Chr11 16283307 16287820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1415 11 456 C2H2 Transcription Factor Family AT2G27760 57.363 1.01e-173 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1415 K00791 - gmx:100792690 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1415 11 16283307 16287820 Gso11g1415 11 16283307 16287820 ECH