Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1411 ATGGCTTCACCCTCCGTCACAGACACCGAAACGAAGCCGTTTTCCGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCCGAAGGAGTCTTCACTGACTTAGTCAACGAAAGTGGCCTCAATTCGAAGTTCAAAATCGATTCCGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATCCGAGAATGAGGGCAGCTTCAAAGAGGCGTGGGATTCTGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCGATGGACAAACAGAACAAAGAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGATGATTCACATAAAAAGGTTAAGTTGATGTGCTCGTATTGTAAGAAGCATGATGAAAGTGAAGTCCCGGATCCTTATTATGGTGGACATCAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAACAAACATGTACAAGAATCCTAA 549 0.4554 MASPSVTDTETKPFSVLFVCLGNICRSPAAEGVFTDLVNESGLNSKFKIDSAGTINYHEGNEADPRMRAASKRRGILITSISRPIKPSDFVDFDLILAMDKQNKEDILEAFNRWKGRHSLPDDSHKKVKLMCSYCKKHDESEVPDPYYGGHQGFEKVLDLLEDACGSLLETILAENKHVQES* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1411 182 Pfam Low molecular weight phosphotyrosine protein phosphatase 16 169 IPR023485 -
Gso11g1411 182 PRINTS LMW phosphotyrosine protein phosphatase signature 16 33 IPR017867 GO:0004725|GO:0006470
Gso11g1411 182 PRINTS LMW phosphotyrosine protein phosphatase signature 59 75 IPR017867 GO:0004725|GO:0006470
Gso11g1411 182 PRINTS LMW phosphotyrosine protein phosphatase signature 143 158 IPR017867 GO:0004725|GO:0006470
Gso11g1411 182 CDD LMWPTP 15 170 - -
Gso11g1411 182 Gene3D - 2 177 - -
Gso11g1411 182 SMART LMWPc_2 14 171 IPR023485 -
Gso11g1411 182 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 3 177 - -
Gso11g1411 182 SUPERFAMILY Phosphotyrosine protein phosphatases I 12 172 IPR036196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1411 Gso-Chr11 16257426 16260540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1411 1 176 Protein tyrosine phosphatase (PTP) family AT3G44620 66.000 5.38e-90 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1411 K25307 - gmx:100527219 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1411 11 16257426 16260540 Gso11g1411 11 16257426 16260540 ECH