Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1391 ATGGGTTTAATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTTAAACCATGTTCTTCTCCTAATTATTCATATCTAAACAATTCCAACACAATATCATCATCATCATCTTCTTCTCCTTCTTCTTCTTTTTCTTTTACTCATAATCAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAAAAGAAGGCCTCCAAAGATGAGGAAGATCAAACGTTTGATGAGGTGAAAGAGGAAAAGGTTAAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTGACACTAGTAAAGGGCATGCTGATGATGAGGTTGTTGATGAGAAGATGATTTTCCATGTTAAGGAAGAAGAAGAAGAGTCCTCAAAGAGAAGCTTCCATGGATGCTCCTTTAACAACAACCAAGAGAGAAGGTTTTGGATTCCTACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGATCACAACCAGCTGCAATGTTAAGGTTACCATGCTATTGCTGTGCTCAAGGATGCAAGAACAACATCAACCATCCAAGGGCTAAGCCATTGAAGGACTTCAGAACCCTCCAAACACATTACAAAAGAAAGCATGGCACAAAGCCATTCATGTGTAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCACTTAAGGATCATATTAGGTCTTTTGGAAAGGGACATAAACCTCATCCTCCCTTTGAAGCCTTTGAGGATGAGAAGGAATGCATTACTACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA 996 0.4056 MGLMECNVEDNKNLYLHAPTFIEWLKPCSSPNYSYLNNSNTISSSSSSSPSSSFSFTHNQFVQETIQFLPILSEKKASKDEEDQTFDEVKEEKVKQVTVALHIGLPDTSKGHADDEVVDEKMIFHVKEEEEESSKRSFHGCSFNNNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGSQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPPFEAFEDEKECITTGSDEDEVNAHHT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1391 331 SUPERFAMILY beta-beta-alpha zinc fingers 236 270 IPR036236 -
Gso11g1391 331 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Gso11g1391 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 270 IPR013087 -
Gso11g1391 331 SMART c2h2final6 166 188 IPR013087 -
Gso11g1391 331 SMART c2h2final6 250 270 IPR013087 -
Gso11g1391 331 SMART c2h2final6 213 245 IPR013087 -
Gso11g1391 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 303 IPR013087 -
Gso11g1391 331 Gene3D Classic Zinc Finger 165 188 - -
Gso11g1391 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Gso11g1391 331 PANTHER ZINC FINGER PROTEIN WIP2 1 328 IPR043584 GO:0003700|GO:0010468
Gso11g1391 331 Gene3D Classic Zinc Finger 207 299 - -
Gso11g1391 331 Pfam Zinc finger, C2H2 type 166 185 IPR013087 -
Gso11g1391 331 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 328 - -
Gso11g1391 331 SUPERFAMILY beta-beta-alpha zinc fingers 157 189 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1391 Gso-Chr11 15944795 15948581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1391 7 319 C2H2 Transcription Factor Family AT1G08290 54.913 2.36e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g1391 zf-C2H2_6 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1391 - - gmx:100788451 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1391 11 15944795 15948581 Gso11g1391 11 15944795 15948581 ECH
Gso12g0718 12 7234875 7238676 Gso11g1391 11 15944795 15948581 GST
Gso12g1548 12 38946113 38950268 Gso11g1391 11 15944795 15948581 PCT
Gso11g3297 11 48778062 48781894 Gso11g1391 11 15944795 15948581 PCT
Gso11g1391 11 15944795 15948581 Gso12g1548 12 38946113 38950268 PCT
Gso11g1391 11 15944795 15948581 Gso11g3297 11 48778062 48781894 PCT