Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1389 ATGGCGAGCCAAAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGACCTTCAAGTCACCATATCCCTTATGGAGTTCTTCATGGGATTAATACTTCATCATCAGCCCTAATCAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCAGCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCTCAAGAGGAGGTTCAAAGTCAGGAGAGGAAAGCAGTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAAATGAGCTCCAATTTGAAACAGAATCTCCAATAAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCACCTTCAACAACAGCAGCAGCAACAACAACAACACGAGACAGCAACAGCAGGCACATCATCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAAGGAGCTGGTTACACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGGTGTGTTTATGGGATGTGGTGGTGCTGGTGGCAGTATAAGTTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAAATGGTTAGAGGATGACCAGCGGCACATAGCGGAGCTCCGGTCGGGGCTGCAGACGCCGCTGTCGGACGGCGAACTAAGAGTGATTGTGGATGGATTTCTGTCTCATTATGATGAAGTTTTCAGGCTGAAAGGGGTGGCTGCTAAAACAGATGTGTTTCATCTTATTAATGGCACATGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAAACCATCAGAGCTCATCACAATGTTGATACCACAGTTAGAGCCCCTGGCGGAGCAGCAAATTATGGTCATATGTGAACTCGGGCATTCGTCACTGCAAACAGAAGAAGCTCTCAGTCAAGGTCTTGAACAGCTTCAGCAGTCTCTTGTTGACACCATTGCCGGCGGGCCCATCGCCGACGGTGTTCAACAGATGGTGGCAGCCATGACCAAGCTTGGCCACCTTGAAGAATTTGTTGCTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTGCTGACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTCATTGATCAGTGATGATAACTCATGCCAAACAACCACTGAATTGCAAATGGTTCAATCTTCTCAGAATCATTTCTCAAGTTTCTGA 1476 0.4573 MASQRIGETGLSESGPSSHHIPYGVLHGINTSSSALINQGSAFDFGELEEAIVLQGIKIRNDEAKASALFTGRPSATLEMFPSWPMRFQQTSRGGSKSGEESSDSGSGVNTLSSKNELQFETESPISIKASSSDHHQAFDQHLQQQQQQQQQHETATAGTSSQNQSAAKSPQEKRKGAGYTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGVFMGCGGAGGSISSGAAMFDMEYAKWLEDDQRHIAELRSGLQTPLSDGELRVIVDGFLSHYDEVFRLKGVAAKTDVFHLINGTWTSPAERCFLWIGGFKPSELITMLIPQLEPLAEQQIMVICELGHSSLQTEEALSQGLEQLQQSLVDTIAGGPIADGVQQMVAAMTKLGHLEEFVAQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRESLISDDNSCQTTTELQMVQSSQNHFSSF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1389 491 MobiDBLite consensus disorder prediction 84 115 - -
Gso11g1389 491 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700|GO:0006355
Gso11g1389 491 Coils Coil 215 235 - -
Gso11g1389 491 Pfam bZIP transcription factor 188 230 IPR004827 GO:0003700|GO:0006355
Gso11g1389 491 Gene3D - 188 236 - -
Gso11g1389 491 MobiDBLite consensus disorder prediction 82 115 - -
Gso11g1389 491 MobiDBLite consensus disorder prediction 176 191 - -
Gso11g1389 491 ProSiteProfiles DOG1 domain profile. 252 460 IPR025422 GO:0006351|GO:0043565
Gso11g1389 491 PANTHER TRANSCRIPTION FACTOR TGA9 65 470 - -
Gso11g1389 491 PANTHER TRANSCRIPTION FACTOR TGA9 65 470 - -
Gso11g1389 491 SUPERFAMILY Leucine zipper domain 189 231 IPR046347 GO:0003700|GO:0006355
Gso11g1389 491 MobiDBLite consensus disorder prediction 130 171 - -
Gso11g1389 491 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 231 IPR004827 GO:0003700|GO:0006355
Gso11g1389 491 Pfam Seed dormancy control 269 344 IPR025422 GO:0006351|GO:0043565
Gso11g1389 491 SMART brlzneu 185 261 IPR004827 GO:0003700|GO:0006355
Gso11g1389 491 MobiDBLite consensus disorder prediction 130 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1389 Gso-Chr11 15881396 15889681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1389 132 491 bZIP Transcription Factor Family AT1G08320 66.391 4.63e-175 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g1389 DOG1 5.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1389 K14431 - gmx:778195 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1389 11 15881396 15889681 Gso11g1389 11 15881396 15889681 ECH
Gso12g0721 12 7296750 7305286 Gso11g1389 11 15881396 15889681 GST
Gso12g1554 12 39016202 39024646 Gso11g1389 11 15881396 15889681 PCT
Gso11g3294 11 48743841 48751788 Gso11g1389 11 15881396 15889681 PCT
Gso11g1389 11 15881396 15889681 Gso12g1554 12 39016202 39024646 PCT
Gso11g1389 11 15881396 15889681 Gso11g3294 11 48743841 48751788 PCT