Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1387 ATGTACAGTACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCTTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCATATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAACAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTGTATCATCTGAAGAGCCATCTCCAGAAATACAGACTGAGCAAGAGTCTGCATGGACAAAGTAACAATGCGACACACAAAATAACCATAAATTCAGGTTCAGCAACAGATGAAAGACTCAGAGAAAACAACGAAACTCATGTCATGAATAATTTAAACGTTGCCCCTCAGTCTATCAACAAAGATTTACACATAAGTGAGGCACTGCAGATGCAAATAGAGGTGCAGAGAAGACTAAATGAGCAACTTCAGGTGCAAAGACTCCTGCAGCTACGTATTGAGGCTCAAGGAAAATACCTTCAGGCAGTGTTAGAGAAGGCTCAGGAAACACTTGGTAGACAGAATTTAGGAGTAGTAGGACTTGAAGCTGCCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGCCTGAATTCAGCATTTTCAGAGCTGAAGGAGATACAGGGATTTAGCCCCCACCATCAAAAACAAACACAAACCAACAACAACCAGCCTATAAATGCAAATGACTGTTCCATGGACAGTTGTCTCACATCCTGTGAGGGATCATCACAAAAAGATCAGCAAGAGATACAAAATAGAGGGATGAACTTAATACCCTTCAATGTTCACACATTCATGGAGGGTCCAAATCTTAATAACCTACCAAACACTGACCTCAAGTGGTGTGATCCTGTGAAGAAGAACAACACCTTCCTTACCCGATTGAGCATGCATGCAGAAAGAAGTCCTAGCAACTTGTCTATGAGCATTGGATTACTTGAAGGAGAAACAACTGAGAATAGAAGCACCATTGTTAGGACAGAATCAATTAAACCAGCTGTGGCTGAGAAAGTTTCTCAAGATTATGGATTGCCATCTAACTACTTTGCTGCTTCAAAACTGGACCAAACCACTGAAGATAATAAAGACACTAAAACTAGTTGCAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA 1245 0.4153 MYSTHQQHQGKNIHSSSSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKSLHGQSNNATHKITINSGSATDERLRENNETHVMNNLNVAPQSINKDLHISEALQMQIEVQRRLNEQLQVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSELVSKVSSQCLNSAFSELKEIQGFSPHHQKQTQTNNNQPINANDCSMDSCLTSCEGSSQKDQQEIQNRGMNLIPFNVHTFMEGPNLNNLPNTDLKWCDPVKKNNTFLTRLSMHAERSPSNLSMSIGLLEGETTENRSTIVRTESIKPAVAEKVSQDYGLPSNYFAASKLDQTTEDNKDTKTSCKQLDLNGFSWN* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1387 414 MobiDBLite consensus disorder prediction 1 24 - -
Gso11g1387 414 PANTHER MYB-RELATED PROTEIN 2 5 414 - -
Gso11g1387 414 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Gso11g1387 414 Gene3D - 49 107 - -
Gso11g1387 414 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Gso11g1387 414 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Gso11g1387 414 Coils Coil 157 177 - -
Gso11g1387 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Gso11g1387 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 414 IPR044848 GO:0003700
Gso11g1387 414 Pfam MYB-CC type transfactor, LHEQLE motif 155 201 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1387 Gso-Chr11 15821256 15824904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1387 82 414 G2-like Transcription Factor Family AT3G04030 46.957 1.80e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso11g1387 Myb_DNA-binding 2.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1387 - - gmx:100781878 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0725 12 7349098 7352139 Gso11g1387 11 15821256 15824904 GST
Gso12g1556 12 39044018 39047154 Gso11g1387 11 15821256 15824904 PCT
Gso11g3292 11 48724773 48728175 Gso11g1387 11 15821256 15824904 PCT
Gso11g1387 11 15821256 15824904 Gso12g1556 12 39044018 39047154 PCT
Gso11g1387 11 15821256 15824904 Gso11g3292 11 48724773 48728175 PCT