Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1384 ATGTCGGAGGCGGAGGAGCTACCCCGGTCTATTGTGCGCCGCGTAGTGAAGGATAAGCTGTCCCGTTGCTCCGAAGACGGAGAAATTTCCGTCAGCAAAGACGCTCTTCTCGCATTGTCCGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCAACGGCTAATGATATATGTAAGGAGTCTAAGAGGCAGATTATCAATGTTGAGGATGTTTTCAAAGCTCTTGAGGAAACTGAGTTCCCTGAGTTTCTTCGTCCTCTGAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGCTGGAAAGAAAGCTGCAGTGTCAAAGGGAAAGGATGATGAGCCGAGAAAGAAAAGGAAGTTGGAAGGTGAGTCACCTGATAAGGGTGAGGGTTCTGATAAAGCTGAGTTATCGGATAAAGGAGAGGATCCTGATAAAGGTGAGAGTGATAAAGGTGAGAGTGGTGACGAGACCAATGATTTAAAGGAATGA 486 0.465 MSEAEELPRSIVRRVVKDKLSRCSEDGEISVSKDALLALSESGRIFIHYLSATANDICKESKRQIINVEDVFKALEETEFPEFLRPLKASLEEFRKKNAGKKAAVSKGKDDEPRKKRKLEGESPDKGEGSDKAELSDKGEDPDKGESDKGESGDETNDLKE* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1384 161 Coils Coil 58 78 - -
Gso11g1384 161 Gene3D Histone, subunit A 1 156 IPR009072 GO:0046982
Gso11g1384 161 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 2 154 - -
Gso11g1384 161 MobiDBLite consensus disorder prediction 98 161 - -
Gso11g1384 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Gso11g1384 161 SUPERFAMILY Histone-fold 7 117 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1384 Gso-Chr11 15797055 15798951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1384 7 112 CCAAT-HAP3 Transcription Factor Family AT4G14540 29.245 1.42e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso11g1384 CBFD_NFYB_HMF 7.7e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1384 K02326 - gmx:100306382 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1384 11 15797055 15798951 Gso11g1384 11 15797055 15798951 ECH
Gso12g0728 12 7373555 7374723 Gso11g1384 11 15797055 15798951 GST