Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1383 ATGCCTCGGGAAAAAGCAATTTCTTCATCAGCTGCTAAGCCATCTGAGCCTGAGGAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGCAAATGATCCAGAGGAAGCAATGGAAGAAGAAGTAGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAGGTGGAAGAAGAGGAGGAAGTGGAGGTGGAAGAAGATGAAGAGGAGGAGGAGGAGGAGGAAGAAGAGGTTGAAGAAGTGGAAGAAGATGATGCCATGCAAAATCATAGCAGTGATGAAACAAAGGTGGAAGATGAGGATGAGAAGAAAAAACATGCTGAACTCCTTTCAATTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGCCTCAGATGAGGATTTGAAATCTTTATGTGAGCGTATTGGGGAAGTTGCAGAGGTTCGAATAATGAAGGGAAAGGATTCTTCCGAGAACAAGGGCTTTGGTTTTGTGACCTTTAGAAGTGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTAAATAATACCGAATTCATGGGTAAAAAAATTAAATGTTCAAAATCTCAAGCCAAGCACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGTTGAAGATCTGAAGAAGATTGTAACTGAGATTGGACCTGGAGTTACTGGTGTGGAACTAGTCAAGGATATGAAGAACACCAACAATAACCGGGGCTTTGCTTTTATTGACTATTATAACCATGCATGTGCTGAGTATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGAGTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTTCCAAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAACTTTTACAATGCTCTCTGGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACACACAGAAGCCAGGACCAGGATTGCTTCCAAGCTATCCACCACATGTTGGTTATGGTTTGGTTGGAGGTGCCTATGGTGGACTTGGTGCAGGATATGCTGCTCCAGGTCTTGCACAGCCCATGCTATATGGAGGAGGTCAAACTCCCTCAGGAATGGCCATCATGCCTATGCTTTTAGCTGATGGACGGATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCCCCACCCTCACATCATAGAGGTGGCAGGGGCGGTGGTGGCAGTGGGAGTGGCAACAGGAATGTCGGGAGTTCAAGTAAGGGAAGGCACAACAATGATGGTGGCCATGGGCGCAGATATCGGCCATATTAG 1518 0.4486 MPREKAISSSAAKPSEPEEPVESDEKVDFEEANDPEEAMEEEVEYEEVEEEEEVEEIEEEVEEVEEEEEVEVEEDEEEEEEEEEEVEEVEEDDAMQNHSSDETKVEDEDEKKKHAELLSIPPHGSEVYIGGIPHASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFRSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLQCSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGYGLVGGAYGGLGAGYAAPGLAQPMLYGGGQTPSGMAIMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNVGSSSKGRHNNDGGHGRRYRPY* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1383 505 MobiDBLite consensus disorder prediction 456 505 - -
Gso11g1383 505 SUPERFAMILY RNA-binding domain, RBD 294 392 IPR035979 GO:0003676
Gso11g1383 505 MobiDBLite consensus disorder prediction 21 95 - -
Gso11g1383 505 Gene3D - 5 204 IPR012677 -
Gso11g1383 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 286 IPR000504 GO:0003723
Gso11g1383 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 196 IPR000504 GO:0003723
Gso11g1383 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 368 IPR000504 GO:0003723
Gso11g1383 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 267 IPR000504 GO:0003723
Gso11g1383 505 Gene3D - 205 285 IPR012677 -
Gso11g1383 505 MobiDBLite consensus disorder prediction 1 119 - -
Gso11g1383 505 MobiDBLite consensus disorder prediction 375 392 - -
Gso11g1383 505 SMART rrm1_1 299 372 IPR000504 GO:0003723
Gso11g1383 505 SMART rrm1_1 126 198 IPR000504 GO:0003723
Gso11g1383 505 SMART rrm1_1 205 282 IPR000504 GO:0003723
Gso11g1383 505 SMART rrm2_1 126 198 IPR003954 GO:0003676
Gso11g1383 505 SMART rrm2_1 299 372 IPR003954 GO:0003676
Gso11g1383 505 CDD RRM_SF 127 198 - -
Gso11g1383 505 Coils Coil 38 92 - -
Gso11g1383 505 SUPERFAMILY RNA-binding domain, RBD 122 289 IPR035979 GO:0003676
Gso11g1383 505 PANTHER RNA RECOGNITION MOTIF 1 478 - -
Gso11g1383 505 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 478 - -
Gso11g1383 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Gso11g1383 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Gso11g1383 505 MobiDBLite consensus disorder prediction 375 396 - -
Gso11g1383 505 Gene3D - 286 394 IPR012677 -
Gso11g1383 505 MobiDBLite consensus disorder prediction 96 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1383 Gso-Chr11 15785249 15795212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1383 127 465 Eukaryotic Initiation Factors Gene Family AT4G34110 25.916 1.82e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1383 K13161 - gmx:100785076 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1383 11 15785249 15795212 Gso11g1383 11 15785249 15795212 ECH
Gso12g0729 12 7380067 7386063 Gso11g1383 11 15785249 15795212 GST