Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1374 ATGAGCATTGTGTGTGTCTACTTTGTCTCTCCTTTCATAGGGCATGGAACTCAGATCCTTGAAATCGCCATGGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGAGGTCTTGATATTCTTGGTGTTAGAACTATTGTCCACTATCGACTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAATAGCTAGAGCTTCTGCTGAAGGTTGTTGTATTGCTTTAATATCATCAAGAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCCAAGGATAACTTTCAATGGTTTCCTTTAGAGAACTCTTACGTGCCAGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAATGAATCCCAAGTATACTGA 420 0.3929 MSIVCVYFVSPFIGHGTQILEIAMDRFRENENGILVATDVAARGLDILGVRTIVHYRLPHSAEVYVHRSGRIARASAEGCCIALISSRDTSKFASLCKSFSKDNFQWFPLENSYVPEVLKRLSLARQIDKITRNESQVY* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1374 139 Pfam Helicase conserved C-terminal domain 22 75 IPR001650 -
Gso11g1374 139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 123 IPR001650 -
Gso11g1374 139 CDD SF2_C_DEAD 21 85 - -
Gso11g1374 139 PANTHER RNA HELICASE 23 137 - -
Gso11g1374 139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 98 IPR027417 -
Gso11g1374 139 SMART helicmild6 2 76 IPR001650 -
Gso11g1374 139 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 23 137 - -
Gso11g1374 139 Gene3D - 17 138 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1374 Gso-Chr11 15655199 15656002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1374 27 116 Eukaryotic Initiation Factors Gene Family AT5G11170 32.258 1.46e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1374 K14805 - gsj:114372964 278.87