Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1373 ATGGAAGATCATCCACCTGGGTTTCGTTTCTTCCCAACAGAAGAAGAGCTTGTTGGCTTCTACCTACACAACAAGCTAGAAGGCCAAAGAAATGCCATAGCCATAGACAGAGTTATCCCAGTTATTGACTTCAATGGCGTTGAGCCTTGGAACCTTCCAACATTTGCTGGGGAGCTTTGTCGTGGAGACACGGAGCAATGGTTTTTCTTTTCGCCCGGTCAAGAGAGGGAAGCCAGGGGAGGGAGACCCAGCAGAACCACAGCTTGTGGGTATTGGAAAGCAACAGGTTCTCCTGGCTATGTTTACTCTTCTGATAACAAAGTCATTGGAGTGAAGAAATCCATGGTGTTCTACAAAGGGAAGGCCCCTATGGGAAGAAAAACCAAATGGAAGATGAATGAGTACAGAGCTATTCATATCCCTAACCAATCCACCCCTCAGTTGAGATGGGAATTCAGCTTGTGTCGAGTGTATGTCATATCGGGGAGCTTTCGAGCATTTGATCGACGACCATTAGAGAAAGATGGATCAGAATCACGTGCAAAAGTGGATGGATTGTGTTCTTCTGAAATTTCACACTTCGAGGGACTCCATGGCTCACACTCTCAGATGCTAGAAGTTAGAGAATCAAGTAGCACAAATTGGGATGTGAATAATAATAATAATGATAAAAGTAATAATGAGGTCCAACTCCAAGAACCGTTGTGGGAATTGGAATGGGAACAATTTAATTGGCTCTAA 741 0.4413 MEDHPPGFRFFPTEEELVGFYLHNKLEGQRNAIAIDRVIPVIDFNGVEPWNLPTFAGELCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKATGSPGYVYSSDNKVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAIHIPNQSTPQLRWEFSLCRVYVISGSFRAFDRRPLEKDGSESRAKVDGLCSSEISHFEGLHGSHSQMLEVRESSSTNWDVNNNNNDKSNNEVQLQEPLWELEWEQFNWL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1373 246 Pfam No apical meristem (NAM) protein 5 136 IPR003441 GO:0003677|GO:0006355
Gso11g1373 246 Gene3D NAC domain 13 163 IPR036093 GO:0003677|GO:0006355
Gso11g1373 246 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Gso11g1373 246 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 245 - -
Gso11g1373 246 ProSiteProfiles NAC domain profile. 4 160 IPR003441 GO:0003677|GO:0006355
Gso11g1373 246 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1373 Gso-Chr11 15638158 15639835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1373 7 245 NAC Transcription Factor Family AT5G22380 56.846 6.86e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g1373 NAM 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1373 - - gmx:100781321 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1373 11 15638158 15639835 Gso11g1373 11 15638158 15639835 ECH
Gso12g0743 12 7493536 7495195 Gso11g1373 11 15638158 15639835 GST
Gso12g1567 12 39145048 39146820 Gso11g1373 11 15638158 15639835 PCT
Gso11g3282 11 48652348 48654997 Gso11g1373 11 15638158 15639835 PCT
Gso11g1373 11 15638158 15639835 Gso12g1567 12 39145048 39146820 PCT
Gso11g1373 11 15638158 15639835 Gso11g3282 11 48652348 48654997 PCT