Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1352 ATGTCTTCCAATAAGAAAAGCCTTCTTAGAACCGTGTTCACAGCAAACGGAAGCTGTGGTTGCAGCAAAACAAAATCCTCTGAAGTGCACGAGCCAACACCAAAATCCAAAACAACACACATTCACCAAAAGGCTAACAACAACAACAACAACAACAACCACAACCTTAGCAGCATGGCTTCTTCCACCACTTCCCCTGAGCAAGTTGATGAAGAGGAGTTCACTTCCACCACAATCTCCGAATCCGAGACATTTCACGATCACAACAACAACAACGACGACGACAACGTTGTACTCAAACGAAGCCCCCTTGTGAATAGCGTGGCGATTGAGAAGGATTCGTCGAATCCGTATCATGATTTCAGGCATTCCATGCTCCAAATGATCTTTGAAAAGGAGATCGAGTCAGAGGACGATCTTCAAGACCTTTTGCAATGCTTTCTTCAGCTGAATGCGCAGTGTCACCACCACGTCATTGTTAAGGCCTTCAATGAGATCTGCAAAGAAGCATTTCCTCACAAGGTTAGTACCACTCCTGCCGTCTCTGAACCTTCTCCCTCTCACCGGAGCCCCCTCATCGTTCAAAAGAGCCGGTGA 597 0.4657 MSSNKKSLLRTVFTANGSCGCSKTKSSEVHEPTPKSKTTHIHQKANNNNNNNNHNLSSMASSTTSPEQVDEEEFTSTTISESETFHDHNNNNDDDNVVLKRSPLVNSVAIEKDSSNPYHDFRHSMLQMIFEKEIESEDDLQDLLQCFLQLNAQCHHHVIVKAFNEICKEAFPHKVSTTPAVSEPSPSHRSPLIVQKSR* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1352 198 MobiDBLite consensus disorder prediction 176 198 - -
Gso11g1352 198 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 108 167 IPR006458 -
Gso11g1352 198 MobiDBLite consensus disorder prediction 39 85 - -
Gso11g1352 198 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 1 175 - -
Gso11g1352 198 MobiDBLite consensus disorder prediction 20 96 - -
Gso11g1352 198 ProSiteProfiles OVATE domain profile. 110 169 IPR006458 -
Gso11g1352 198 MobiDBLite consensus disorder prediction 178 198 - -
Gso11g1352 198 Pfam Transcriptional repressor, ovate 114 169 IPR006458 -
Gso11g1352 198 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gso11g1352 198 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 175 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1352 Gso-Chr11 15239775 15241093 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso11g1352 Ovate 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1352 - - gmx:102660065 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1352 11 15239775 15241093 Gso11g1352 11 15239775 15241093 ECH
Gso12g0760 12 7658594 7659601 Gso11g1352 11 15239775 15241093 GST
Gso11g3271 11 48545676 48547039 Gso11g1352 11 15239775 15241093 PCT
Gso11g1352 11 15239775 15241093 Gso11g3271 11 48545676 48547039 PCT