Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1350 ATGTCGGCCTCGCGCGCTCCCCCCGCCGGCGCCGGCGCCTCTAAACCGCCGGACCAGATCATGCACTCCATGAAACGCCAACTCCCGTTCTCCTCTATGAAACCTCCCTTCGTCGCCGCCGGAGACTACCACCGCTTTGCCCCCGACCAACGCCATGACGCCGCCGAAGCCATCGTCGTCAAGACTCCCCAACTGAAGCGGAAGAGTGAAGCGGCTGATTTTGAAGCTGATTCCGGTGATAGGATGACTCCTGGATTCACTGAAGCAGCTAATAGTCCTTTTCAGACACCTGTATCAGGAAAGACGGGGAAGGGAGGCAAATCCTTTAGGCTGACAAAGGGCAACAGACTTGGAACTCAGACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGACTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGTGAGGCTGATGATAGTTTTCCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGAAGGAGCGCCAGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGAGATCTTAGTGAAGATGAAAATAATGACAAGTTGCTTTTTGTTACTGAGGAGGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTAATAGCTATTAAAGCTCCTCATGGAACCACATTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGTTGATGTTGCACCCAAACTTCCATCCAGTCCAGATGGTACTAAACATCAATCAACAGTGGTCCCGGAGGATAGAGGGAAGGACATAGAAGTGCAGGGACAAGAAGCTCCTGGGCCTAGTTCAGATTTTACTACCTCCCAGGATTTTGTGAGTGGGATCATGAAGATTGTTCCTTCTGATGTTGCTAGTGAAGCTGATTATTGGCTTTTATCAGATGCCGACGTTAGTATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGAACCACTCCAAGAAGATTATTGCATGACTCGCGAGAACACTGCGACCCCAAGTCATCCTTCAAATGTAGATGAAGTGTCTTCTGCACCTAAATCTACTGGAGGTTGA 1383 0.4613 MSASRAPPAGAGASKPPDQIMHSMKRQLPFSSMKPPFVAAGDYHRFAPDQRHDAAEAIVVKTPQLKRKSEAADFEADSGDRMTPGFTEAANSPFQTPVSGKTGKGGKSFRLTKGNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFPSLQAEVENLTMKERQLDEQIREMQERLRDLSEDENNDKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDLYLVSQFEEKFEEINGVDVAPKLPSSPDGTKHQSTVVPEDRGKDIEVQGQEAPGPSSDFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELEPLQEDYCMTRENTATPSHPSNVDEVSSAPKSTGG* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1350 460 PANTHER TRANSCRIPTION FACTOR E2F 21 449 IPR015633 GO:0000978|GO:0006357
Gso11g1350 460 PANTHER TRANSCRIPTION FACTOR E2FB 21 449 - -
Gso11g1350 460 MobiDBLite consensus disorder prediction 336 359 - -
Gso11g1350 460 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Gso11g1350 460 CDD E2F_DD 221 323 IPR032198 GO:0046983
Gso11g1350 460 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Gso11g1350 460 MobiDBLite consensus disorder prediction 1 33 - -
Gso11g1350 460 MobiDBLite consensus disorder prediction 88 102 - -
Gso11g1350 460 Gene3D - 214 323 - -
Gso11g1350 460 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Gso11g1350 460 Coils Coil 222 256 - -
Gso11g1350 460 MobiDBLite consensus disorder prediction 113 136 - -
Gso11g1350 460 Gene3D - 135 208 IPR036388 -
Gso11g1350 460 MobiDBLite consensus disorder prediction 436 460 - -
Gso11g1350 460 SUPERFAMILY E2F-DP heterodimerization region 220 323 IPR037241 -
Gso11g1350 460 Coils Coil 157 177 - -
Gso11g1350 460 MobiDBLite consensus disorder prediction 87 136 - -
Gso11g1350 460 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1350 Gso-Chr11 15226393 15232574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1350 23 460 E2F-DP Transcription Factor Family AT5G22220 56.051 1.06e-154 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso11g1350 E2F_CC-MB 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1350 K06620 - gmx:100819817 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1350 11 15226393 15232574 Gso11g1350 11 15226393 15232574 ECH
Gso12g0762 12 7666235 7672229 Gso11g1350 11 15226393 15232574 GST