Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1346 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTAGAGGAGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAAAAGAAATATGTGTTGAAAAAAATAAGGCTTGCAAGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAACGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTAGATTACCTGCATTCGAATTATGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAAGATCAGGATGTTCGCCTTGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATTCCGTATGGATTCAAATCTGATATTTGGTCACTCGGGTGCTGTATATACGAGATGGCTGCTCATCGCCCTGCCTTTAAAGCTTTTGATATGGCAGGACTGATAAGCAAAGTGAACCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCGACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAGCCTTATGTGGATCAATATCGTCCGTCTTTCAGTCCTCCAACAACCTGTTCTCCTGTAAAACCAATTTCTGCTGTCAATGATCATCGAAAAAATATGGCTGAAAGTCAAAACAGTAATAGTTCAAGTAGTGACAAAGATACTTTGATGTCAAATGAGAAAAACATTGCAACAGCAGGACCAAAGTGTGATAACGAAGCCACTGAGATGGATCAAACATCAATCGATGATGATGGCTCAGATGAAGAAAGTGGTTCTTGTAATGTCAATGCCAAAACAGCTGAGCAAGAGGTGGTTGAACCATCTCATAACAAACACCATTCTAACGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAGGAAGGAAAAGTTAGAGAAGCAACTTCTCCAATGAGAGGCAACCGCATAAAGCCTAGTGGCCTATCAACACAAAAAATAAGCACAGAGACATTATCTAAATTGCCTAAGCCTACTTTTATTGCTCCTAGTATGAAGCCTAATTTAGAATCACATGCTGCACTTGCAAGGGCAAGCCCTGACCCTGCAAAAAGAATGATGGGATCACATTATCCAAAGCATCAGATTCTGATGACAGAAGCCTCACCAAAAGTTAAAGCTAGACATGATTTCACTCCACCATCTGCACTTGTCAAACAAGTAGAAGGAGATGGAGTTTCTCCAAGGCCAAGACAAAGGACTCCCCCAAGCTTACTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGCAGCAAATGATACTGGGAAGCTAGGCACAAATAAAATAGTCCAGGAACCTCAGATGAGCCCTTGTCAATTGGCCAATGGCAATGTACCACATATTTCAAGACAGGTTACTACTAGAGAGCCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGATTGCAAACAGACAGCAGCAATTCTGCCTCATCTTCAGTTTCTATCCAAGGATGTGAACTTGCTGATGATGCAACAACTTTCATTGACATGAGAGAACAGATGCTTCCTAATCATGAGAAAGTAAACCACATTGTAGGTGTTGAATCATGTCCTGATAGGAGCCAACCTACAACTTGTGCACATTGTAAGATGGTTGAAAAAGTGCCTAAAGAAACCTGTGAGGTTTCCACGAATTTTCAGAATACTATTAGTAGTAATGAGAAAGTGAGTTCCAGTTTAACTCTAGATCACCACCATGTTGAAGATTCTAAGGTAACACTTGCTTCAGAAGGTGGTCTTGTCATAAACAAGACAACTACATCTACTACTACCTCCAACTGTGATGATAGATCTGTAGACCCCTCTGCTGGAGCCACCAAAGAAATAAAAGATTTTCAAGATATTTCCAAGGAAATGCCTTTAACCAAGTCTCCTAAGGAAATCAAGGATTTTCAAGATATTTCCAAGGAAATGCCTTTAACCAAGTCTCCAAAACAAGCACCCCCAAGTTCTGGAGAAAAATCTGTTCATGTAGAAGTTAGTCCAGTAAGTGAACCAGATATAGTTAGCCAGCCAACACTTGGATGCAAGCCCCCTGGTGATGACAAATTCACAGTGAGGGAGCGACTGTCACCGGTGGCTGAAACTGTTCCTGTGGTCACCACTACTAAATCATCAAGCCAGAAAGTCTTGCAAGAGAAAGGAACTTTGTTGCAGAATCCAGCACAAGAAAGGCCTGACACTGGCCATCTTCCTCCAGCCTTTGATGATGTTATCCATGTCATACGCCACAGTAGTTACCGCGTTGGAAGTGAGCAACCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTCATCAATGTAGTGAGGGATGATTTAGAAATGAGGAACATAACCTCACCTTTGACCCCCCTCAAATCTTCAAGTTGCTCTGATGCTGCAAGCTTGAAATCAAACATTTCTGATCAGCCGGAAACGAAGAACTCGAACACTCCTCCAATCCTTAAATCTTCAAGTCTCTTCGATGCTTCGAGCATGAAATCCAGCATTTCTGATTATCCAGGTCTTAAGGAACAAGATGTGAGTAACCCTCCTCCTTTAGTTTCAGAACCTGATTCTGCTGAGGCCAGTAAATGCAACACTCCTGTAAATGAAGAGAAACTACCGGTGGCAAAGGAAACATTGGATGTGAAATCTTTCAGGCAGAGAGCAGAGGCACTTGAAGAGCTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGACAAGGTCTCTCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGGGGACGCTCTTCATGA 3177 0.4243 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVDYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKVNRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPSFSPPTTCSPVKPISAVNDHRKNMAESQNSNSSSSDKDTLMSNEKNIATAGPKCDNEATEMDQTSIDDDGSDEESGSCNVNAKTAEQEVVEPSHNKHHSNVESKQPKTIRNIMMALKEGKVREATSPMRGNRIKPSGLSTQKISTETLSKLPKPTFIAPSMKPNLESHAALARASPDPAKRMMGSHYPKHQILMTEASPKVKARHDFTPPSALVKQVEGDGVSPRPRQRTPPSLLRRPSFSGRMRLAGIDVPNAANDTGKLGTNKIVQEPQMSPCQLANGNVPHISRQVTTREPQKAFERSSKGLQTDSSNSASSSVSIQGCELADDATTFIDMREQMLPNHEKVNHIVGVESCPDRSQPTTCAHCKMVEKVPKETCEVSTNFQNTISSNEKVSSSLTLDHHHVEDSKVTLASEGGLVINKTTTSTTTSNCDDRSVDPSAGATKEIKDFQDISKEMPLTKSPKEIKDFQDISKEMPLTKSPKQAPPSSGEKSVHVEVSPVSEPDIVSQPTLGCKPPGDDKFTVRERLSPVAETVPVVTTTKSSSQKVLQEKGTLLQNPAQERPDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTPLKSSSCSDAASLKSNISDQPETKNSNTPPILKSSSLFDASSMKSSISDYPGLKEQDVSNPPPLVSEPDSAEASKCNTPVNEEKLPVAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1346 1058 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1346 1058 MobiDBLite consensus disorder prediction 944 974 - -
Gso11g1346 1058 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 954 1041 - -
Gso11g1346 1058 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 884 - -
Gso11g1346 1058 Gene3D Transferase(Phosphotransferase) domain 1 90 343 - -
Gso11g1346 1058 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 884 - -
Gso11g1346 1058 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 954 1041 - -
Gso11g1346 1058 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1346 1058 MobiDBLite consensus disorder prediction 479 509 - -
Gso11g1346 1058 MobiDBLite consensus disorder prediction 319 349 - -
Gso11g1346 1058 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gso11g1346 1058 MobiDBLite consensus disorder prediction 571 589 - -
Gso11g1346 1058 MobiDBLite consensus disorder prediction 747 790 - -
Gso11g1346 1058 MobiDBLite consensus disorder prediction 559 589 - -
Gso11g1346 1058 MobiDBLite consensus disorder prediction 356 375 - -
Gso11g1346 1058 MobiDBLite consensus disorder prediction 696 719 - -
Gso11g1346 1058 CDD STKc_Nek 7 262 - -
Gso11g1346 1058 SUPERFAMILY Protein kinase-like (PK-like) 4 309 IPR011009 -
Gso11g1346 1058 MobiDBLite consensus disorder prediction 894 932 - -
Gso11g1346 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gso11g1346 1058 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gso11g1346 1058 MobiDBLite consensus disorder prediction 360 375 - -
Gso11g1346 1058 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1346 1058 Coils Coil 984 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1346 Gso-Chr11 15174279 15180993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1346 14 263 MAP Kinase Kinase Kinase AT1G53570 31.373 1.45e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso11g1346 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1346 K08857 - gmx:100818747 2006.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1346 11 15174279 15180993 Gso11g1346 11 15174279 15180993 ECH
Gso12g0766 12 7714350 7720952 Gso11g1346 11 15174279 15180993 GST
Gso12g1581 12 39299294 39307015 Gso11g1346 11 15174279 15180993 PCT
Gso11g3267 11 48495472 48502941 Gso11g1346 11 15174279 15180993 PCT
Gso11g1346 11 15174279 15180993 Gso12g1581 12 39299294 39307015 PCT
Gso11g1346 11 15174279 15180993 Gso11g3267 11 48495472 48502941 PCT