Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1343 ATGATGGGTATGATGAAAATTTGCGTCTTTGTGTATTTCACCCTGATGATCACAATGGGTTGTTATGGTGTCACAAACCCGAATGATCTCAAAATTCTAAATGATTTCAGAAAAAGGATGAAGAATCCAGAGCTTCTCAAATGGCCAGACAACGGAAATGACCCTTGTGGCCCTCCTTCGTGGCCTTATGTGTACTGTTCTGGAGGGAGAGTCACTCAGATTCAGACCCAGAATCTAGGTCTTGAAGGATCATTGCCTCCAAACTTTAACCAGCTCTCAGAGCTTACGAATTTGGGTCTTCAACGCAACAACCTTAGTGGAACATTGCCTACTTTCAGTGGATTGTCCAATTTGGAATATGCTTTCTTGGATTACAATGAGTTTGATAAAATCCCATCTGATTTCTTCAATGGACTCAACAACATCAAGTTCTTGTCTTTGGAGGTAAACCCTTTGAATGCTACCACAGGGTGGTATTTTCCTAAGGACTTGGAAAATTCAGTGCAATTGACCAATCTTTCTCTGGTGAATTGTAATTTGGTAGGAACATTGCCTGATTTCCTAGGCACATTGCCCTCTCTAAAAAATCTGAGGCTTTCAGGCAACAGATTGACTGGTACAATTCCATCTAGTTTTAATCAGTCTTTAATCCAGGTTTTGTGGTTGAATGATCAAAAAGGAGGTGGGATGACAGGTCCTATTGATGTCATTGCTTCAATGACTTTCCTCAGACAGGTTTGGCTTCATGGAAACCAATTCAGTGGGACAATTCCACAGAACATTGGAAATCTAACTTCCTTGCAGGAGCTCAACCTCAATAGCAATCAACTTGTTGGCTTGATTCCAGATTCCTTGGCAAATATGGACCTTCAGATACTGGTATTAAACAATAACGGTTTCATGGGTCCAATACCTAAGTTCAAGGCTGCCAAAATATCTTATGATTCCAATTTATTTTGTCAGTCCAAGCCTGGGCTTGAATGTGCCCCTGAAGTTACTGCACTCCTGGATTTTCTCAATAATCTGAATTACCCTTCAGGTCTTGCTTCTAAATGGTCAGGCAATGATCCATGTGGAGAATCGTGGTTCGGATTGAGCTGCGGTCAGAATTCAAAGGTATCTATAATCAATTTGCCAAGACAACAGCTGAATGGTACACTGAGTCCCTCACTGGCTAAGTTAGATTCACTCCTTGAAATTAGGCTTGCAGAGAATAGTATTACCGGCAAAGTTCCGAGTAATTTTACTCAATTGAAATCTTTGAGGTTGTTGGATTTAAGTGATAACAATTTTGAGCCACCACTGCCAAACTTTCATAGTGGTGTGAAGGTTATTATTGAGGGTAACCTTCGTCTTGGCAATCAACCTGTAAGTAGTCCCAGTCCCATGCCTATTACAAGCACACCACCTTCAAGTGCACAGCCTTCACCGCACAACCCGTCGCGGTCACTGTCCCCGCCATCCTCCCATATGCAACCTTCTCAAAGGCAGAGTCCAAGCTCGAATTCGAATCAGTTTAGTCCTGTTCGGTCAAAACCCCAGTCAAATGGCTTCAAAAGATTCAAAACAGTAGCTATAGTTGCTGGAGCTGCAATCTTTGCATTTGTAGCTCTTTTGGTTACTTCTCTCTTCTTATGTTGCTTGAAGAAGGAAAAAGCCTCCAATGTTGTGGTTCACACAAAAGATCCATCTTATCCAGAAAAGATGATTAAAGTTGCAGTTATGGATAGCACCACTGAAAGCTTATCAACAAAGACAGGGATAAGTTTTCTGACCAACATTAGTGGTGAAACTGAGAACTCTCATGTAATTGAGGATGGAAACATTGCCATCTCTATTCAAGATCTACGCAAGGTCACCAACAACTTTGCTTCAGAAAATGAGCTAGGCCATGGTGGGTTTGGAACTGTTTACAAAGGTGAGCTAGAGAATGGCATAAAAATAGCAGTGAAGAGAATGGAGTGTGGAGCTGTTAGCAGTAGAGCACTGGAGGAGTTTCATGCTGAAATAGCTGTTCTTTCCAAGGTCCGGCACCGGCATTTGGTATCCCTGCTAGGCTATTCCATTGAAGGAAATGAAAGACTTTTGGTTTATGAATATATGCCTATGGGTGCTCTAAGCAGGCATCTTTTTAATTGGAAAACCTTGAAATTGGAGCCATTGTCTCTGTCACATAGGCTTACAATAGCGCTTGATGTTGCTAGAGCGATGGAATATCTTCATGGTCTTGCACGCCAAACCTTCATCCATAGAGACCTCAAGTCTTCTAATATTCTACTGGGTGATGATTATCGTGCAAAAGTTTCTGATTTTGGTCTGGTGAAACTTGCCCCGGATGGCGAGAAGTCTGTGGCAACAAAGCTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCTTGATGGAACTTTTGACCGGACTAATGGCTCTTGACGAGAGACGGTCAGAGGAAAGCCGATACCTAGCGGAATGGTTTTGGCAAATCAAATCGAGCAAAGAAACACTTATGGCTGCCATTGATCCAGCTCTTGAAGCAAGTGGAGAGACTTTTGAGAGCATTTCCATTGTGGCCGAACTTGCTGGACACTGCACTTCCAGGGATGCAAGTCACAGGCCTGATATGAGCCATGCAGTTGGCGTGCTATCCGCATTAGTGGAGAAATGGCGACCGGTTGATGAAGAATTTGATTATGGCTCCGGCATTGACCTCACTCAACCACTTCCCCAGTTGCTGAAAGCTTGGAAGGAATCAGAAGGCAAAGAATCAAGCTATACAAGTGCACACAGTGAAGGAAGCATGCCAGCTAGGCCTACTGGTTTTGCAGACTCTTTTACTTCTGCTGATGCAAGATGA 2907 0.43 MMGMMKICVFVYFTLMITMGCYGVTNPNDLKILNDFRKRMKNPELLKWPDNGNDPCGPPSWPYVYCSGGRVTQIQTQNLGLEGSLPPNFNQLSELTNLGLQRNNLSGTLPTFSGLSNLEYAFLDYNEFDKIPSDFFNGLNNIKFLSLEVNPLNATTGWYFPKDLENSVQLTNLSLVNCNLVGTLPDFLGTLPSLKNLRLSGNRLTGTIPSSFNQSLIQVLWLNDQKGGGMTGPIDVIASMTFLRQVWLHGNQFSGTIPQNIGNLTSLQELNLNSNQLVGLIPDSLANMDLQILVLNNNGFMGPIPKFKAAKISYDSNLFCQSKPGLECAPEVTALLDFLNNLNYPSGLASKWSGNDPCGESWFGLSCGQNSKVSIINLPRQQLNGTLSPSLAKLDSLLEIRLAENSITGKVPSNFTQLKSLRLLDLSDNNFEPPLPNFHSGVKVIIEGNLRLGNQPVSSPSPMPITSTPPSSAQPSPHNPSRSLSPPSSHMQPSQRQSPSSNSNQFSPVRSKPQSNGFKRFKTVAIVAGAAIFAFVALLVTSLFLCCLKKEKASNVVVHTKDPSYPEKMIKVAVMDSTTESLSTKTGISFLTNISGETENSHVIEDGNIAISIQDLRKVTNNFASENELGHGGFGTVYKGELENGIKIAVKRMECGAVSSRALEEFHAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPMGALSRHLFNWKTLKLEPLSLSHRLTIALDVARAMEYLHGLARQTFIHRDLKSSNILLGDDYRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDERRSEESRYLAEWFWQIKSSKETLMAAIDPALEASGETFESISIVAELAGHCTSRDASHRPDMSHAVGVLSALVEKWRPVDEEFDYGSGIDLTQPLPQLLKAWKESEGKESSYTSAHSEGSMPARPTGFADSFTSADAR* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1343 968 PANTHER OSJNBA0070M12.3 PROTEIN 5 968 - -
Gso11g1343 968 CDD STKc_IRAK 629 899 - -
Gso11g1343 968 SMART serkin_6 623 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1343 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Gso11g1343 968 Pfam Protein tyrosine and serine/threonine kinase 626 895 IPR001245 GO:0004672|GO:0006468
Gso11g1343 968 MobiDBLite consensus disorder prediction 939 968 - -
Gso11g1343 968 Gene3D Transferase(Phosphotransferase) domain 1 701 914 - -
Gso11g1343 968 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gso11g1343 968 SUPERFAMILY L domain-like 26 436 - -
Gso11g1343 968 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Gso11g1343 968 MobiDBLite consensus disorder prediction 453 514 - -
Gso11g1343 968 SUPERFAMILY Protein kinase-like (PK-like) 603 899 IPR011009 -
Gso11g1343 968 ProSiteProfiles Protein kinase domain profile. 623 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1343 968 PANTHER OSJNBA0070M12.3 PROTEIN 5 968 - -
Gso11g1343 968 Gene3D Phosphorylase Kinase; domain 1 587 700 - -
Gso11g1343 968 Gene3D Ribonuclease Inhibitor 27 325 IPR032675 -
Gso11g1343 968 SMART LRR_typ_2 115 138 IPR003591 -
Gso11g1343 968 SMART LRR_typ_2 191 215 IPR003591 -
Gso11g1343 968 SMART LRR_typ_2 92 114 IPR003591 -
Gso11g1343 968 SMART LRR_typ_2 264 287 IPR003591 -
Gso11g1343 968 SMART LRR_typ_2 418 440 IPR003591 -
Gso11g1343 968 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Gso11g1343 968 Pfam Leucine rich repeat N-terminal domain 330 367 IPR013210 -
Gso11g1343 968 Gene3D Ribonuclease Inhibitor 330 455 IPR032675 -
Gso11g1343 968 MobiDBLite consensus disorder prediction 462 482 - -
Gso11g1343 968 MobiDBLite consensus disorder prediction 483 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1343 Gso-Chr11 15131516 15135761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1343 83 904 Receptor kinase-like Gene Family AT5G07280 30.673 1.97e-77 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso11g1343 PK_Tyr_Ser-Thr 8.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1343 - - gmx:100814501 1850.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1343 11 15131516 15135761 Gso11g1343 11 15131516 15135761 ECH