Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1341 ATGGGGTTTTTGCTCAAAGAGGCTTTGAGGACTCTGTGCTCAAGGAATCGCTGGTCTTATGCCATTTTTTGGAAGATCGGTTGCAATAATTCCAAGCTGTTAATCTGGGAAGATTACTACTATGAACCCTTGCCATCTCCTTTCCCACCACGAGATGGGGAAGGATGCTGGTTTTCTTCGGAGTCTCAGCTTATTCAGGAGGAGGACAGAGTCTGTGTATTGATTAACAAAATGATGGTGAATAATTCTGTCAGTATTGCTGGAGAAGGGATAGTTGGACGGGCGGCATTTACAGGAAACTATCAGTGGATTCTTTTGAACAATTTCACTAGAGATGCTTATCCGCCAGAGGTATATCCTGAGTTGCATTACCAATTTTCAGCTGGAATGCAGACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTTCTTTCTTGCCGATAATGGAAGATATAGGATTTGTGAATGATGTAAAGAACTTGTTCTTGCAATTGGGATGTGTACCTGGTGCCCTTCTATCTGAAGACTATTCAGCAAAGGTTTCTAATAAAAAATTTGCTGGACCTGTGACTGTTAATCCACCTCTCATTACTTCAGATTGCACTCCCTCGGTAGCTAATGGTTCCAACCAACTTACTAATTCTCCTCTTGCTTCAAGGCCTGTTGCTCAGCCACCTTATCCTCTAAGGGGAGGAATAAATAATTACCAGGGTTCTTTATTGACACCTCAAGCCCATAACCCGAACCAGATATTTGATGGCATTTGCCAACCAAAGGCTCATTCAATGATCAAAACAAATGTCTGTGGCCAACCAAAGAAGACCGTTGTTGAGGCTGAAGCTAAAGTGATACCTGCAAATTTTGATTCATGTCTGCAACAGCATTCTGTTTATAATGCTAGATCTGAATTCAATGAGTTATCTAGTTTCAATCAATCAAATCTGAGTGACTGCTGCCTTAAATATATTGAACAACAAACATCAGGTGTTGGGAGACAGAGTCATGTTAATCCTAACATGAATTTATCAAGTGCCTTAAATATGCCTCTACTAAAAACCAATGGAGGAAAAATTCTGCAACAGAATCAGAGTTCTAGTAGCAGTTCACTACTTGGAGGAATCCCAATATGTAGTGGGAGTAATCTTTTGAGGACAAATATGATTAACTGCTCAGTTTCAAATCCTCCCAAAGTATCCACTTCTGATTTTTCTGGAACACACAAGGTTGGGTTTGGTCTTCAAAGTAACAATGCAACAACTAATGCTGGGCTTTGTTCTGTGCCTAATTTCACTAATCAATCAGTTACCAGTCACATGAATCTAGAAGGCTCTGATCAGAAGAATCAGGCATATGATGCTTTCGCTTCAGCTGATCAAAGGCAAGATGATGATTTGCTTCAGGCTGCTCTTAAGATTCCATCTCTTAATCTTGAGGAGCATGTGCCTATGGGTGATCAAATCCCTGGTTTTGTTCAAGATTGGCTCAATAAAGATGTTACCAGTCAACATATGATGAAAATGAATGTTAAGCATGAAGAAGCCTATGCTCAACTTCCATCTGGTGATGACCTCTTCGATGTTTTAGGTATGGATTTGAAAAGGAGACTACTCAATGGAAGCTGGAATAAGTTGCTTGCCACAGATTCAGATGACAACACAGAACATCTAGATAAAAAGGCAACATGCATGAATTTGCAAGGTGTAGGTCCTGATAATAGTTATTCAGTTAATGAAGCAATATCAGAAAGTGGCATCTTCTCTGGAACAGGCACAGACCACCTTTTAGATGCTGTGGTTTCAAAAGCTCAATCTTCTGCAAAACAGAATTATGATGAAATGTCATGCAGGACAACATTGACAAGGATTAGTACAGCCTCCATTCCTTCTCCTGTCTGCAAGCAAGTTATGCCTGATCATGTTGTCCCAAGGGGATTGTTTGATTTTCCTAAGACCGGAGTTAAAACAGCTGCTGCTGAAACAAGTTCTCTTAGGTCTGGGTGTAGCAAGGATGATGCTGGAAACTGCTCTCAAACTACTTCCATATATGGGTCTAAGCTTAGTTCATGGGTTGAGAATAGTAGTAATGTGAAACGTGAAAGCAGTGTTTCAACTGGATACTCCAAGCGACCAGATGAAGTTTGCAAATCAAATCGTAAAAGACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGATAGTTAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGGGCTACATGGGCATATGAGGTTGGCTCGCAATCAATGGTTTGTCCAATCATTGTTGAAGATCTCAATCCTCCTCGTCAGATGCTAGTAGAGATGCTTTGTGAGGAACGGGGTTTCTTTCTGGAAATAGCCGACTTAATCAGAGGATTAGGTTTAACAATCTTGAAGGGGGTCATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACGAGGATGGAAATATTTATGTCACTGGTTCGTCTTTTGGATCAAACAGTGAAGGGCGGTGGTGCATCTTCATCGAATGCAATTGATAACAACATGATGGTGTATCAATCTTTCCCACAAGCTACCCAGATAACAGCAACTGGTAGGCCCAGTAGTTTGCAATGA 2820 0.4138 MGFLLKEALRTLCSRNRWSYAIFWKIGCNNSKLLIWEDYYYEPLPSPFPPRDGEGCWFSSESQLIQEEDRVCVLINKMMVNNSVSIAGEGIVGRAAFTGNYQWILLNNFTRDAYPPEVYPELHYQFSAGMQTVAVIPVLPHGVVQLGSFLPIMEDIGFVNDVKNLFLQLGCVPGALLSEDYSAKVSNKKFAGPVTVNPPLITSDCTPSVANGSNQLTNSPLASRPVAQPPYPLRGGINNYQGSLLTPQAHNPNQIFDGICQPKAHSMIKTNVCGQPKKTVVEAEAKVIPANFDSCLQQHSVYNARSEFNELSSFNQSNLSDCCLKYIEQQTSGVGRQSHVNPNMNLSSALNMPLLKTNGGKILQQNQSSSSSSLLGGIPICSGSNLLRTNMINCSVSNPPKVSTSDFSGTHKVGFGLQSNNATTNAGLCSVPNFTNQSVTSHMNLEGSDQKNQAYDAFASADQRQDDDLLQAALKIPSLNLEEHVPMGDQIPGFVQDWLNKDVTSQHMMKMNVKHEEAYAQLPSGDDLFDVLGMDLKRRLLNGSWNKLLATDSDDNTEHLDKKATCMNLQGVGPDNSYSVNEAISESGIFSGTGTDHLLDAVVSKAQSSAKQNYDEMSCRTTLTRISTASIPSPVCKQVMPDHVVPRGLFDFPKTGVKTAAAETSSLRSGCSKDDAGNCSQTTSIYGSKLSSWVENSSNVKRESSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLEKTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEARNDKIWARFAVEANRDVTRMEIFMSLVRLLDQTVKGGGASSSNAIDNNMMVYQSFPQATQITATGRPSSLQ* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1341 939 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 725 774 IPR011598 GO:0046983
Gso11g1341 939 MobiDBLite consensus disorder prediction 697 739 - -
Gso11g1341 939 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 939 - -
Gso11g1341 939 CDD bHLH_AtLHW_like 729 798 - -
Gso11g1341 939 MobiDBLite consensus disorder prediction 697 711 - -
Gso11g1341 939 MobiDBLite consensus disorder prediction 715 739 - -
Gso11g1341 939 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 939 IPR043561 GO:0003700|GO:0006355
Gso11g1341 939 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1341 Gso-Chr11 15060441 15067672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1341 526 910 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.987 9.38e-121 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1341 - - gmx:100812899 1867.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1341 11 15060441 15067672 Gso11g1341 11 15060441 15067672 ECH
Gso12g0772 12 7841134 7848368 Gso11g1341 11 15060441 15067672 GST
Gso12g1590 12 39393878 39401548 Gso11g1341 11 15060441 15067672 PCT
Gso11g3264 11 48459878 48467172 Gso11g1341 11 15060441 15067672 PCT
Gso11g1341 11 15060441 15067672 Gso12g1590 12 39393878 39401548 PCT
Gso11g1341 11 15060441 15067672 Gso11g3264 11 48459878 48467172 PCT