Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1340 ATGGCAACGTACTTTCATGGCAGCACTTCAGAAACCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTAGTACCGTACTCTGACGCGGCACAACACCCAACGCAAAACATGCTCCTCGTCAATCCCAACAATAACACTAGTAACACTAGTTCCACTTCCACCAACGCGCTCCACCTTGGTAACTTCTCCCACGCGCCGCCACCTCCTTCTCCCAACAACAACCGTGAACACCATCATCATCACCTGACTGGGGTTACCATTCCCTCTTCAAACTTCCTCCTATCCAACGCCGCCGCCGACCCTGCTCGATCGTCGTTCCTCGGGCAACATGAATTCTCCGGTTTCCACAGTAGTGCTGCCGCCACCACAAGCACGGCGGCGGCATCTCGTGGTAACAACTATAACCTATGGGGTTCCATATTTGATCAGTCTGCGTCGAATATCATGACATCAACTACACACACCCCATCTAGTAACATGGGGTGTGTCATCGGTCATTCGACGCAGATTGGTTTCCACAGGCCTAATCATTTGTCATTGAGCCTTTCTTCACAACAAACACCATATAGTTCTCTCTCGGGGGAGACTCATGCTATTTCTCTGGCGAACCGAGGCGGCGGCGGCGATGATATGAGGGGTATGCACAATGGAGTTTCTAGCATGCATAGTGTTTCTTTGGGTTCTAAGTATTTGAAAGCAACACAGGAGCTTCTTGATGAAGTTGTGAATGTGGGCAAGGGAATCTTCAAAGGGGAGGAATCTATGGAAGGGGATAAGAAAGAGAAGATGAAAGGGAATATTGAATCCACTTCTTGGGTTGGTGATGGTTCGAGCTGTGGAGGAGGGGAGAATAATAATAATAATGATGGAGGCAAACAAGGAGTTGAACTCAGCACAGCACAGAGACAAGAGCTTCAGATGAAGAAGTCAAAACTTGTGACCATGCTAGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGATAACATCATTTGAGCAAGCAGCGGGTGTTGGAGCTGCAAAGTCTTACACAGCCCTTGCGTTAAAGACAATCTCAAAGCAATTTCGGTGTCTCAAAGATGCAATCTCTTCACAAATAAAGACCACGAGCAAAACCTTAGGTGAAGATGATTGCTTGGGAGTTAAGGTAGAAGGTTCGAGGCTTAGGTATGTTGATCATCAACTGAGACAACAACGTGCATTACAACAGCTTGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGAGCTTGGCTTTTTGAACATTTCTTGCACCCTTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAGCCAATGGTAGAAGAAATGTACTTGGAAGAGGTAAAACAAGAACCAAACAATAGCTCTCAGGATAACACCACAAAAAGATCAAAAGAATCAAGCAAGGAGTTATGGTCAGAAGCTAATGCTACTGCACAGGAATCTGGTGCAATGAGACTTGATCACATTAACATTCTCCAATCAAAAGCAGAAAGCTTCAACAACAACAACAACAACCAAACCACTTCCCCAACAGAGATCTCTAATAATTCCCATAATTCACTCCAATCAGCTGGTTTCCATCTTGCTGACATGCAAAGCCCAAACAAGCCAATTAGAAGCACTTCTGAAATGCAGAACTCTCCAGGTAGCATTCTTTCAGTGGACATGGAAATGAAGCCTCGTCATCATGGAGAGACAAATAATAATACTATTATTACTAGAGAAGGCAACAACAACACAACAAAGTTTGGCATTGAAAGCCATGGTGGTGGTGGTGGTGGTTTTGGAGCATTTCCCAATATGGAAGACATTGGAAGGTTCCATCATCATCATCATCATCATCATCATGTCACTGATCAGCAATCACTGGCTCCTAGGTTTCATGGAAATGGTGTTTCTCTCACTCTTGGACTTCCACACAGCACTGAGAATAATAATAACCTTTCCCTCTCAGGAACTACTCATCAACATGGATTCCTCTCACAGAACATGCACTTGGGAATGAGATCAACAACCAATAATGCGAATAATGAGTTTTGTGGTGCCATCAACACTACTCCACCTTCTAATTCTCACTCAGGCACCAGTTATGAGAGCATTGACATTATTCAAAACAGAAAGAGATTTGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTAA 2304 0.4501 MATYFHGSTSETPSSAEGLQTLYLMNPNYVVPYSDAAQHPTQNMLLVNPNNNTSNTSSTSTNALHLGNFSHAPPPPSPNNNREHHHHHLTGVTIPSSNFLLSNAAADPARSSFLGQHEFSGFHSSAAATTSTAAASRGNNYNLWGSIFDQSASNIMTSTTHTPSSNMGCVIGHSTQIGFHRPNHLSLSLSSQQTPYSSLSGETHAISLANRGGGGDDMRGMHNGVSSMHSVSLGSKYLKATQELLDEVVNVGKGIFKGEESMEGDKKEKMKGNIESTSWVGDGSSCGGGENNNNNDGGKQGVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQIVITSFEQAAGVGAAKSYTALALKTISKQFRCLKDAISSQIKTTSKTLGEDDCLGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNSSQDNTTKRSKESSKELWSEANATAQESGAMRLDHINILQSKAESFNNNNNNQTTSPTEISNNSHNSLQSAGFHLADMQSPNKPIRSTSEMQNSPGSILSVDMEMKPRHHGETNNNTIITREGNNNTTKFGIESHGGGGGGFGAFPNMEDIGRFHHHHHHHHHVTDQQSLAPRFHGNGVSLTLGLPHSTENNNNLSLSGTTHQHGFLSQNMHLGMRSTTNNANNEFCGAINTTPPSNSHSGTSYESIDIIQNRKRFAAQLLRDFVA* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1340 767 MobiDBLite consensus disorder prediction 494 532 - -
Gso11g1340 767 Gene3D - 428 508 - -
Gso11g1340 767 SMART prehox3 226 377 IPR006563 -
Gso11g1340 767 CDD homeodomain 425 486 IPR001356 GO:0003677
Gso11g1340 767 MobiDBLite consensus disorder prediction 261 301 - -
Gso11g1340 767 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 716 - -
Gso11g1340 767 SUPERFAMILY Homeodomain-like 426 491 IPR009057 -
Gso11g1340 767 MobiDBLite consensus disorder prediction 546 568 - -
Gso11g1340 767 SMART HOX_1 425 489 IPR001356 GO:0003677
Gso11g1340 767 Coils Coil 309 329 - -
Gso11g1340 767 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 8 716 - -
Gso11g1340 767 ProSiteProfiles 'Homeobox' domain profile. 422 485 IPR001356 GO:0003677
Gso11g1340 767 Pfam Homeobox KN domain 442 481 IPR008422 GO:0003677|GO:0006355
Gso11g1340 767 MobiDBLite consensus disorder prediction 658 679 - -
Gso11g1340 767 MobiDBLite consensus disorder prediction 277 301 - -
Gso11g1340 767 Pfam Associated with HOX 234 376 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1340 Gso-Chr11 14984472 14990059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1340 1 767 Homeobox Transcription Factor Family AT2G35940 41.310 2.74e-128 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso11g1340 POX 1.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1340 - - gsj:114376060 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1340 11 14984472 14990059 Gso11g1340 11 14984472 14990059 ECH
Gso12g0773 12 7917775 7923441 Gso11g1340 11 14984472 14990059 GST
Gso12g1591 12 39441674 39446903 Gso11g1340 11 14984472 14990059 PCT
Gso11g3263 11 48416062 48421142 Gso11g1340 11 14984472 14990059 PCT
Gso11g1340 11 14984472 14990059 Gso12g1591 12 39441674 39446903 PCT
Gso11g1340 11 14984472 14990059 Gso11g3263 11 48416062 48421142 PCT