Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1338 ATGGCAGAAGTTGAGATCCCTCAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACCACTGTGACAGGCATAACATATGATAGAGAAAGCATAGAGAAGTGGTTGCTTAAGGCCAAAGATTGTGTGTGTCCTGTTTCCAAACAACCCTTGCCGAGAAGCTCTCAATACTTAACACCTAACCACACTCTTCGGAGGTTGATTCAAGCTTGGTGTTCAGCAAACACTTCCAACGGTGTTGATCGAATTCCGACCCCGAAAACGCCTTTGAGCATGGTCCAAGTTCAGAAGCTTCTCAAGGGTCTTGAGGTTCCTTGTTCTTATCAAAAATCATTGGAGAAGTTGCATGGCTTGGCTACAACTGAGAGGAACAGAATCTGCATGGCTGAGGCTGGTGTGGCTAAGGCCATGATCAAATTGATTAACAAGAGTTTCAAAGAAGGAAACACAAATTTAAACAACACCACTTGCATAGAAAAGGTTTTGAGAATTGTTCATGTTCTTTGGAGCAATGATCAAAGTAGCATGAAAAGTACTCTAGTTGGGGAGAACAACTTGGACTTCATCAACTCCTTGACTTGGATTTTGAAGGTTCATTTGGATGACAACAACATCAAGATGGTGAACGAAGCAATGCCCCTTTTGAAGTTGACAATTGAAGTTGCTGCTGACTCAACCCTTTTGGGGAGTTTAGGCCTTGAATTCTTCAAGGAAATTGTGAGAGTTTTGAGAAAGAGAGCACTACTCTCTCAACAAGCCATTAAATCAGCTTTGTGTGTGCTTACAGAAACTAGCACTTCAGGTAGAAACAGAACAAGGATTGTTGAAGCAGGTGCAGTCACAGAACTCATAGAGCTTGAGCTAGAGAAGCCAGAGAAGAACATGACAGAACTCATATTCAACCTTCTGGCACTCCTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTCTGCGACACGCCGCGGCCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTTATAGCCAAGTTTTCAGCATCAAATGAGGTTGTTCTAGAGATGTTGAGGGTTGGAGCTGTGTCAAAGCTTTGCATGCTTATGCAAGCTGATTGTGCTTCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAATTGTATTTGTTCACTAGGCACCAAAGGTGA 1254 0.4266 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEKWLLKAKDCVCPVSKQPLPRSSQYLTPNHTLRRLIQAWCSANTSNGVDRIPTPKTPLSMVQVQKLLKGLEVPCSYQKSLEKLHGLATTERNRICMAEAGVAKAMIKLINKSFKEGNTNLNNTTCIEKVLRIVHVLWSNDQSSMKSTLVGENNLDFINSLTWILKVHLDDNNIKMVNEAMPLLKLTIEVAADSTLLGSLGLEFFKEIVRVLRKRALLSQQAIKSALCVLTETSTSGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNLLALLCSCADGREQFLRHAAAIAVVSKRVLRVSAATDDRAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMLMQADCASYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1338 417 PANTHER WDSAM1 PROTEIN 3 414 IPR045185 GO:0061630
Gso11g1338 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 414 - -
Gso11g1338 417 SUPERFAMILY RING/U-box 3 82 - -
Gso11g1338 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Gso11g1338 417 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Gso11g1338 417 Gene3D - 109 405 IPR011989 -
Gso11g1338 417 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Gso11g1338 417 SUPERFAMILY ARM repeat 255 395 IPR016024 -
Gso11g1338 417 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1338 Gso-Chr11 14940408 14941999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1338 3 414 U-box Gene Family AT3G11840 40.618 3.56e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1338 - - gmx:100811293 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0775 12 7958073 7959578 Gso11g1338 11 14940408 14941999 GST
Gso12g1592 12 39465347 39466852 Gso11g1338 11 14940408 14941999 PCT
Gso11g3262 11 48410209 48411761 Gso11g1338 11 14940408 14941999 PCT
Gso11g1338 11 14940408 14941999 Gso12g1592 12 39465347 39466852 PCT
Gso11g1338 11 14940408 14941999 Gso11g3262 11 48410209 48411761 PCT